Delila Program: ckhelix

ckhelix program

Documentation for the ckhelix program is below, with links to related programs in the "see also" section.

{   version = 1.03; (* of ckhelix.p 2004 Sep 12}

(* begin module describe.ckhelix *)
   ckhelix: check that the helix location is where one wants

   ckhelix(makelogop: in, ckhelixp: in, output: out);

   makelogop: the parameter file of the makelogo program
      wave location: the point in bases on THIS logo which is to
         align with the other logos.
         NOTE:  this is NOT necessarily the high or low point
         of the wave as given by the wave parameter file of the
         makelogo program, hence it is not read from that file.
      zero:  location of the desired center in cm on the page
   output: messages to the user


   The program is used to determine the position to place a sequence
logo so that a particular point of the cosine wave (in bases of the
nucleic acid coordinate system) is exactly at a given point on the
page in cm.  This allows one to adjust the location of the logos so
that they can overlap.



see also

   Thomas Dana Schneider


technical notes

(* end module describe.ckhelix *)
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