Delila Program: dotsba

dotsba program

Documentation for the dotsba program is below, with links to related programs in the "see also" section.

{version = 1.07; (* of dotsba.p 1990 December 9}

(* begin module describe.dotsba *)
   dotsba: dots to database

   dotsba(dots: in,  database: out, output: out)

   dots: dot input format of sequences.
      First line is the header line for the database.
      Second line is the standard, not to be copied to the database.
      Following lines have a period (dot, '.') replacing bases that
      are the same as the standard or a different base.  There may be
      any number of spaces.  Following this is a bar (|).  Following
      the bar are other data to be copied to the database: clone number,
      primer for sequencing, and the date.
   database:  reformatted data ready for sites program
   output: messages to the user

   To convert from dots format to one the sites program can use.
   It should not have been necesary to do this, but Peter Papp didn't
   type the original sequences in unfortunately.



see also

   Thomas Dana Schneider

   This is a stupid program.

technical notes

(* end module describe.dotsba *)
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