Delila Program: freb

freb program

Documentation for the freb program is below, with links to related programs in the "see also" section.

{   version = 1.18; (* of freb.p 2010 Nov 15}

(* begin module describe.freb *)
   freb: frequency table to Delila book

   freb(frebp: in, book: out, output: out)


   frebp: input frequency table (parameters to the program)

     The first line is the name of the site.

     The following lines each have a set of numbers, 5 per line,
     representing first the coordinate and then the numbers of a,c,g
     and t to use.

     If the numbers are integers, then those integers are used to
     create the sequences.  The numbers can be real in which case the
     smallest power of 10 multiplier is used to make the numbers

   book: sequences which could have produced the frebp frequencies,
     in Delila book format.

   output: messages to the user


   The freb program converts a table of frequencies to a set of
   aligned sequences so they may be analyzed.  The raw sequences have
   the same frequencies, but, of course, are not the same as the
   original sequences.



see also
   program to create a sequence set from a table: frese.p
   program to create a book: makebk.p
   program to transpose the table: transpose.p

   example parameter file: frebp

   Thomas Dana Schneider


technical notes

(* end module describe.freb *)
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