Delila Program: kenin

kenin program

Documentation for the kenin program is below, with links to related programs in the "see also" section.

{version = 1.24; (* of kenin.p 1991 Mar 23}

(* begin module describe.kenin *)
   kenin: create Delila instructions from Ken's all.gen instructions

   kenin(allgen: in, inst: out; output: out)

   allgen:  gene instructions of the form provided by Kenn Rudd:
      piecename l1 l2 geneA l3 l4 geneB
      These are on a single line.  The first location is the start
      of the gene.  If l1>l2, the gene is on the complementary strand
   keninp: parameters to control the program.
      First line: FROM and TO of the output instructions.
      Second line: if the first character is 'b' then both open reading frames
  and identified genes are written to inst.  If it is 'n' then no open
  reading frames (orf) genes are not made into instructions.  If it is
  'o' then ONLY orfs are used.
   inst:  Delila instructions corresponding to allgen:
      piece piecename;
      get from l1 -FROM to l1 + TO;
   output: messages to the user

   This program converts Kenn Rudd's list of gene locations in his
   database into Delila instructions.



see also

   Thomas Dana Schneider


technical notes

(* end module describe.kenin *)
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