% bst file for Proteins Structure Function & Genetics % version = 1.00 of psfg.bst 2002 Sep 1 % Dr. Thomas D. Schneider % toms@alum.mit.edu % permanent email: toms@alum.mit.edu % https://alum.mit.edu/www/toms/ % source: % From: Thomas Hamelryck % To: toms@alum.mit.edu % Subject: Proteins style file % Date: Wed, 28 Aug 2002 22:01:44 +0200 % % Hi Tom, % % Thanks a lot for maintaining the site on LATEX bib & style files for % molecular biologists. I attach a bst file for Proteins Structure Function & % Genetics. I've generated it with MakeBst and edited a couple of things % manually. The proteins.bst file seems to be outdated. Hope this is useful. % % Cheers, % % --- % Thomas Hamelryck Vrije Universiteit Brussel (VUB) % Intitute for Molecular Biology ULTR Department % Paardenstraat 65 1640 Sint-Gensius-Rode Belgium % http://ultr.vub.ac.be/~thomas %% %% This is file `psfg.bst', %% generated with the docstrip utility. %% %% The original source files were: %% %% merlin.mbs (with options: `seq-no,vonx,nm-revf,ed-rev,jnrlst,dt-jnl,xmth,yrp-semi,yrpp-xsp,jxper,jttl-rm,thtit-a,vnum-x,num-xser,jnm-x,btit-rm,bt-rm,add-pub,pre-pub,blk-tit,ppx,xedn,xand,etal-it,url,url-blk') %% ---------------------------------------- %% *** Proteins Structure Function & Genetics *** %% %% Copyright 1994-2002 Patrick W Daly % =============================================================== % IMPORTANT NOTICE: % This bibliographic style (bst) file has been generated from one or % more master bibliographic style (mbs) files, listed above. % % This generated file can be redistributed and/or modified under the terms % of the LaTeX Project Public License Distributed from CTAN % archives in directory macros/latex/base/lppl.txt; either % version 1 of the License, or any later version. % =============================================================== % Name and version information of the main mbs file: % \ProvidesFile{merlin.mbs}[2002/01/14 4.03 (PWD, AO, DPC)] % For use with BibTeX version 0.99a or later %------------------------------------------------------------------- % This bibliography style file is intended for texts in ENGLISH % This is a numerical citation style, and as such is standard LaTeX. % It requires no extra package to interface to the main text. % The form of the \bibitem entries is % \bibitem{key}... % Usage of \cite is as follows: % \cite{key} ==>> [#] % \cite[chap. 2]{key} ==>> [#, chap. 2] % where # is a number determined by the ordering in the reference list. % The order in the reference list is that by which the works were originally % cited in the text, or that in the database. %--------------------------------------------------------------------- ENTRY { address author booktitle chapter edition editor howpublished institution journal key month note number organization pages publisher school series title type url volume year } {} { label } INTEGERS { output.state before.all mid.sentence after.sentence after.block } FUNCTION {init.state.consts} { #0 'before.all := #1 'mid.sentence := #2 'after.sentence := #3 'after.block := } STRINGS { s t} FUNCTION {output.nonnull} { 's := output.state mid.sentence = { ". " * write$ } { output.state after.block = { add.period$ write$ newline$ "\newblock " write$ } { output.state before.all = 'write$ { add.period$ " " * write$ } if$ } if$ mid.sentence 'output.state := } if$ s } FUNCTION {output} { duplicate$ empty$ 'pop$ 'output.nonnull if$ } FUNCTION {output.check} { 't := duplicate$ empty$ { pop$ "empty " t * " in " * cite$ * warning$ } 'output.nonnull if$ } FUNCTION {fin.entry} { add.period$ write$ newline$ } FUNCTION {new.block} { output.state before.all = 'skip$ { after.block 'output.state := } if$ } FUNCTION {new.sentence} { output.state after.block = 'skip$ { output.state before.all = 'skip$ { after.sentence 'output.state := } if$ } if$ } FUNCTION {add.blank} { " " * before.all 'output.state := } FUNCTION {no.blank.or.punct} { "\hspace{0pt}" * before.all 'output.state := } FUNCTION {date.block} { ";" * no.blank.or.punct } FUNCTION {not} { { #0 } { #1 } if$ } FUNCTION {and} { 'skip$ { pop$ #0 } if$ } FUNCTION {or} { { pop$ #1 } 'skip$ if$ } STRINGS {z} FUNCTION {remove.dots} { 'z := "" { z empty$ not } { z #1 #1 substring$ z #2 global.max$ substring$ 'z := duplicate$ "." = 'pop$ { * } if$ } while$ } FUNCTION {new.block.checka} { empty$ 'skip$ 'new.block if$ } FUNCTION {new.block.checkb} { empty$ swap$ empty$ and 'skip$ 'new.block if$ } FUNCTION {new.sentence.checka} { empty$ 'skip$ 'new.sentence if$ } FUNCTION {new.sentence.checkb} { empty$ swap$ empty$ and 'skip$ 'new.sentence if$ } FUNCTION {field.or.null} { duplicate$ empty$ { pop$ "" } 'skip$ if$ } FUNCTION {emphasize} { duplicate$ empty$ { pop$ "" } { "{\em " swap$ * "\/}" * } if$ } FUNCTION {tie.or.space.prefix} { duplicate$ text.length$ #3 < { "~" } { " " } if$ swap$ } FUNCTION {capitalize} { "u" change.case$ "t" change.case$ } FUNCTION {space.word} { " " swap$ * " " * } % Here are the language-specific definitions for explicit words. % Each function has a name bbl.xxx where xxx is the English word. % The language selected here is ENGLISH FUNCTION {bbl.and} { "and"} FUNCTION {bbl.etal} { "et~al." } FUNCTION {bbl.editors} { "editors" } FUNCTION {bbl.editor} { "editor" } FUNCTION {bbl.edby} { "edited by" } FUNCTION {bbl.edition} { "edition" } FUNCTION {bbl.volume} { "volume" } FUNCTION {bbl.of} { "of" } FUNCTION {bbl.number} { "number" } FUNCTION {bbl.nr} { "no." } FUNCTION {bbl.in} { "in" } FUNCTION {bbl.pages} { "" } FUNCTION {bbl.page} { "" } FUNCTION {bbl.chapter} { "chapter" } FUNCTION {bbl.techrep} { "Technical Report" } FUNCTION {bbl.mthesis} { "Master's thesis" } FUNCTION {bbl.phdthesis} { "Ph.D. thesis" } MACRO {jan} {"January"} MACRO {feb} {"February"} MACRO {mar} {"March"} MACRO {apr} {"April"} MACRO {may} {"May"} MACRO {jun} {"June"} MACRO {jul} {"July"} MACRO {aug} {"August"} MACRO {sep} {"September"} MACRO {oct} {"October"} MACRO {nov} {"November"} MACRO {dec} {"December"} MACRO {acmcs} {"ACM Computing Surveys"} MACRO {acta} {"Acta Informatica"} MACRO {cacm} {"Communications of the ACM"} MACRO {ibmjrd} {"IBM Journal of Research and Development"} MACRO {ibmsj} {"IBM Systems Journal"} MACRO {ieeese} {"IEEE Transactions on Software Engineering"} MACRO {ieeetc} {"IEEE Transactions on Computers"} MACRO {ieeetcad} {"IEEE Transactions on Computer-Aided Design of Integrated Circuits"} MACRO {ipl} {"Information Processing Letters"} MACRO {jacm} {"Journal of the ACM"} MACRO {jcss} {"Journal of Computer and System Sciences"} MACRO {scp} {"Science of Computer Programming"} MACRO {sicomp} {"SIAM Journal on Computing"} MACRO {tocs} {"ACM Transactions on Computer Systems"} MACRO {tods} {"ACM Transactions on Database Systems"} MACRO {tog} {"ACM Transactions on Graphics"} MACRO {toms} {"ACM Transactions on Mathematical Software"} MACRO {toois} {"ACM Transactions on Office Information Systems"} MACRO {toplas} {"ACM Transactions on Programming Languages and Systems"} MACRO {tcs} {"Theoretical Computer Science"} FUNCTION {bibinfo.check} { swap$ duplicate$ missing$ { pop$ pop$ "" } { duplicate$ empty$ { swap$ pop$ } { swap$ pop$ } if$ } if$ } FUNCTION {bibinfo.warn} { swap$ duplicate$ missing$ { swap$ "missing " swap$ * " in " * cite$ * warning$ pop$ "" } { duplicate$ empty$ { swap$ "empty " swap$ * " in " * cite$ * warning$ } { swap$ pop$ } if$ } if$ } FUNCTION {format.url} { url empty$ { "" } { "\urlprefix\url{" url * "}" * } if$ } STRINGS { bibinfo} INTEGERS { nameptr namesleft numnames } FUNCTION {format.names} { 'bibinfo := duplicate$ empty$ 'skip$ { 's := "" 't := #1 'nameptr := s num.names$ 'numnames := numnames 'namesleft := { namesleft #0 > } { s nameptr "{vv~}{ll}{ ff}{, jj}" format.name$ bibinfo bibinfo.check 't := nameptr #1 > { namesleft #1 > { ", " * t * } { "," * s nameptr "{ll}" format.name$ duplicate$ "others" = { 't := } { pop$ } if$ t "others" = { " " * bbl.etal emphasize * } { " " * t * } if$ } if$ } 't if$ nameptr #1 + 'nameptr := namesleft #1 - 'namesleft := } while$ } if$ } FUNCTION {format.names.ed} { format.names } FUNCTION {format.authors} { author "author" format.names } FUNCTION {get.bbl.editor} { editor num.names$ #1 > 'bbl.editors 'bbl.editor if$ } FUNCTION {format.editors} { editor "editor" format.names duplicate$ empty$ 'skip$ { "," * " " * get.bbl.editor * } if$ } FUNCTION {format.note} { note empty$ { "" } { note #1 #1 substring$ duplicate$ "{" = 'skip$ { output.state mid.sentence = { "l" } { "u" } if$ change.case$ } if$ note #2 global.max$ substring$ * "note" bibinfo.check } if$ } FUNCTION {format.title} { title duplicate$ empty$ 'skip$ { "t" change.case$ } if$ "title" bibinfo.check } FUNCTION {output.bibitem} { newline$ "\bibitem{" write$ cite$ write$ "}" write$ newline$ "" before.all 'output.state := } FUNCTION {n.dashify} { 't := "" { t empty$ not } { t #1 #1 substring$ "-" = { t #1 #2 substring$ "--" = not { "--" * t #2 global.max$ substring$ 't := } { { t #1 #1 substring$ "-" = } { "-" * t #2 global.max$ substring$ 't := } while$ } if$ } { t #1 #1 substring$ * t #2 global.max$ substring$ 't := } if$ } while$ } FUNCTION {word.in} { bbl.in capitalize " " * } FUNCTION {format.date} { "" duplicate$ empty$ year "year" bibinfo.check duplicate$ empty$ { swap$ 'skip$ { "there's a month but no year in " cite$ * warning$ } if$ * } { swap$ 'skip$ { swap$ " " * swap$ } if$ * } if$ } FUNCTION {format.btitle} { title "title" bibinfo.check duplicate$ empty$ 'skip$ { } if$ } FUNCTION {either.or.check} { empty$ 'pop$ { "can't use both " swap$ * " fields in " * cite$ * warning$ } if$ } FUNCTION {format.bvolume} { volume empty$ { "" } { bbl.volume volume tie.or.space.prefix "volume" bibinfo.check * * series "series" bibinfo.check duplicate$ empty$ 'pop$ { swap$ bbl.of space.word * swap$ emphasize * } if$ "volume and number" number either.or.check } if$ } FUNCTION {format.number.series} { volume empty$ { number empty$ { series field.or.null } { series empty$ { number "number" bibinfo.check } { output.state mid.sentence = { bbl.number } { bbl.number capitalize } if$ number tie.or.space.prefix "number" bibinfo.check * * bbl.in space.word * series "series" bibinfo.check * } if$ } if$ } { "" } if$ } FUNCTION {format.edition} { edition duplicate$ empty$ 'skip$ { output.state mid.sentence = { "l" } { "t" } if$ change.case$ "edition" bibinfo.check " " * bbl.edition * } if$ } INTEGERS { multiresult } FUNCTION {multi.page.check} { 't := #0 'multiresult := { multiresult not t empty$ not and } { t #1 #1 substring$ duplicate$ "-" = swap$ duplicate$ "," = swap$ "+" = or or { #1 'multiresult := } { t #2 global.max$ substring$ 't := } if$ } while$ multiresult } FUNCTION {format.pages} { pages duplicate$ empty$ 'skip$ { duplicate$ multi.page.check { n.dashify } { } if$ "pages" bibinfo.check } if$ } FUNCTION {format.journal.pages} { pages duplicate$ empty$ 'pop$ { swap$ duplicate$ empty$ { pop$ pop$ format.pages } { ":" * swap$ n.dashify "pages" bibinfo.check * } if$ } if$ } FUNCTION {format.vol.num.pages} { volume field.or.null duplicate$ empty$ 'skip$ { "volume" bibinfo.check } if$ format.journal.pages } FUNCTION {format.chapter.pages} { chapter empty$ 'format.pages { type empty$ { bbl.chapter } { type "l" change.case$ "type" bibinfo.check } if$ chapter tie.or.space.prefix "chapter" bibinfo.check * * pages empty$ 'skip$ { ", " * format.pages * } if$ } if$ } FUNCTION {format.booktitle} { booktitle "booktitle" bibinfo.check } FUNCTION {format.in.ed.booktitle} { format.booktitle duplicate$ empty$ 'skip$ { editor "editor" format.names.ed duplicate$ empty$ 'pop$ { "," * " " * get.bbl.editor ", " * * swap$ * } if$ word.in swap$ * } if$ } FUNCTION {empty.misc.check} { author empty$ title empty$ howpublished empty$ month empty$ year empty$ note empty$ and and and and and { "all relevant fields are empty in " cite$ * warning$ } 'skip$ if$ } FUNCTION {format.thesis.type} { type duplicate$ empty$ 'pop$ { swap$ pop$ "t" change.case$ "type" bibinfo.check } if$ } FUNCTION {format.tr.number} { number "number" bibinfo.check type duplicate$ empty$ { pop$ bbl.techrep } 'skip$ if$ "type" bibinfo.check swap$ duplicate$ empty$ { pop$ "t" change.case$ } { tie.or.space.prefix * * } if$ } FUNCTION {format.article.crossref} { key duplicate$ empty$ { pop$ journal duplicate$ empty$ { "need key or journal for " cite$ * " to crossref " * crossref * warning$ } { "journal" bibinfo.check emphasize word.in swap$ * } if$ } { word.in swap$ * " " *} if$ " \cite{" * crossref * "}" * } FUNCTION {format.crossref.editor} { editor #1 "{vv~}{ll}" format.name$ "editor" bibinfo.check editor num.names$ duplicate$ #2 > { pop$ "editor" bibinfo.check " " * bbl.etal emphasize * } { #2 < 'skip$ { editor #2 "{ff }{vv }{ll}{ jj}" format.name$ "others" = { "editor" bibinfo.check " " * bbl.etal emphasize * } { bbl.and space.word * editor #2 "{vv~}{ll}" format.name$ "editor" bibinfo.check * } if$ } if$ } if$ } FUNCTION {format.book.crossref} { volume duplicate$ empty$ { "empty volume in " cite$ * "'s crossref of " * crossref * warning$ pop$ word.in } { bbl.volume capitalize swap$ tie.or.space.prefix "volume" bibinfo.check * * bbl.of space.word * } if$ editor empty$ editor field.or.null author field.or.null = or { key empty$ { series empty$ { "need editor, key, or series for " cite$ * " to crossref " * crossref * warning$ "" * } { series emphasize * } if$ } { key * } if$ } { format.crossref.editor * } if$ " \cite{" * crossref * "}" * } FUNCTION {format.incoll.inproc.crossref} { editor empty$ editor field.or.null author field.or.null = or { key empty$ { format.booktitle duplicate$ empty$ { "need editor, key, or booktitle for " cite$ * " to crossref " * crossref * warning$ } { word.in swap$ * } if$ } { word.in key * " " *} if$ } { word.in format.crossref.editor * " " *} if$ " \cite{" * crossref * "}" * } FUNCTION {format.org.or.pub} { 't := "" address empty$ t empty$ and 'skip$ { address "address" bibinfo.check * t empty$ 'skip$ { address empty$ 'skip$ { ": " * } if$ t * } if$ } if$ } FUNCTION {format.publisher.address} { publisher "publisher" bibinfo.warn format.org.or.pub } FUNCTION {format.organization.address} { organization "organization" bibinfo.check format.org.or.pub } FUNCTION {article} { output.bibitem format.authors "author" output.check format.title "title" output.check new.sentence crossref missing$ { journal remove.dots "journal" bibinfo.check "journal" output.check add.blank format.date "year" output.check date.block format.vol.num.pages output } { format.article.crossref output.nonnull format.pages output } if$ format.url output format.note output fin.entry } FUNCTION {book} { output.bibitem author empty$ { format.editors "author and editor" output.check } { format.authors output.nonnull crossref missing$ { "author and editor" editor either.or.check } 'skip$ if$ } if$ format.btitle "title" output.check crossref missing$ { format.bvolume output new.sentence format.number.series output format.publisher.address output } { new.sentence format.book.crossref output.nonnull } if$ format.edition output format.date "year" output.check format.url output format.note output fin.entry } FUNCTION {booklet} { output.bibitem format.authors output format.title "title" output.check new.sentence howpublished "howpublished" bibinfo.check output address "address" bibinfo.check output format.date output format.url output format.note output fin.entry } FUNCTION {inbook} { output.bibitem author empty$ { format.editors "author and editor" output.check } { format.authors output.nonnull crossref missing$ { "author and editor" editor either.or.check } 'skip$ if$ } if$ format.btitle "title" output.check crossref missing$ { format.publisher.address output format.bvolume output new.sentence format.number.series output } { new.sentence format.book.crossref output.nonnull } if$ format.edition output format.date "year" output.check date.block add.blank format.pages "pages" output.check format.url output format.note output fin.entry } FUNCTION {incollection} { output.bibitem format.authors "author" output.check format.title "title" output.check new.sentence crossref missing$ { format.in.ed.booktitle "booktitle" output.check format.publisher.address output format.bvolume output format.number.series output format.edition output } { format.incoll.inproc.crossref output.nonnull } if$ format.date "year" output.check date.block add.blank format.pages "pages" output.check format.url output format.note output fin.entry } FUNCTION {inproceedings} { output.bibitem format.authors "author" output.check format.title "title" output.check new.sentence crossref missing$ { format.in.ed.booktitle "booktitle" output.check publisher empty$ { format.organization.address output } { organization "organization" bibinfo.check output format.publisher.address output } if$ format.bvolume output format.number.series output format.pages output } { format.incoll.inproc.crossref output.nonnull format.pages output } if$ format.date "year" output.check date.block add.blank format.pages "pages" output.check format.url output format.note output fin.entry } FUNCTION {conference} { inproceedings } FUNCTION {manual} { output.bibitem author empty$ { organization "organization" bibinfo.check duplicate$ empty$ 'pop$ { output address "address" bibinfo.check output } if$ } { format.authors output.nonnull } if$ format.btitle "title" output.check new.sentence author empty$ { organization empty$ { address "address" bibinfo.check output } 'skip$ if$ } { organization "organization" bibinfo.check output address "address" bibinfo.check output } if$ format.edition output format.date output format.url output format.note output fin.entry } FUNCTION {mastersthesis} { output.bibitem format.authors "author" output.check format.title "title" output.check new.sentence bbl.mthesis format.thesis.type output.nonnull school "school" bibinfo.warn output address "address" bibinfo.check output format.date "year" output.check format.url output format.note output fin.entry } FUNCTION {misc} { output.bibitem format.authors output format.title output new.sentence howpublished "howpublished" bibinfo.check output format.date output format.url output format.note output fin.entry empty.misc.check } FUNCTION {phdthesis} { output.bibitem format.authors "author" output.check format.title "title" output.check new.sentence bbl.phdthesis format.thesis.type output.nonnull school "school" bibinfo.warn output address "address" bibinfo.check output format.date "year" output.check format.url output format.note output fin.entry } FUNCTION {proceedings} { output.bibitem editor empty$ { organization "organization" bibinfo.check output } { format.editors output.nonnull } if$ format.btitle "title" output.check format.bvolume output format.number.series output editor empty$ { publisher empty$ 'skip$ { format.publisher.address output } if$ } { publisher empty$ { format.organization.address output } { organization "organization" bibinfo.check output format.publisher.address output } if$ } if$ format.date "year" output.check format.url output format.note output fin.entry } FUNCTION {techreport} { output.bibitem format.authors "author" output.check format.title "title" output.check new.sentence format.tr.number output.nonnull institution "institution" bibinfo.warn output address "address" bibinfo.check output format.date "year" output.check format.url output format.note output fin.entry } FUNCTION {unpublished} { output.bibitem format.authors "author" output.check format.title "title" output.check format.date output format.url output format.note "note" output.check fin.entry } FUNCTION {default.type} { misc } READ STRINGS { longest.label } INTEGERS { number.label longest.label.width } FUNCTION {initialize.longest.label} { "" 'longest.label := #1 'number.label := #0 'longest.label.width := } FUNCTION {longest.label.pass} { number.label int.to.str$ 'label := number.label #1 + 'number.label := label width$ longest.label.width > { label 'longest.label := label width$ 'longest.label.width := } 'skip$ if$ } EXECUTE {initialize.longest.label} ITERATE {longest.label.pass} FUNCTION {begin.bib} { preamble$ empty$ 'skip$ { preamble$ write$ newline$ } if$ "\begin{thebibliography}{" longest.label * "}" * write$ newline$ "\expandafter\ifx\csname url\endcsname\relax" write$ newline$ " \def\url#1{{\tt #1}}\fi" write$ newline$ "\expandafter\ifx\csname urlprefix\endcsname\relax\def\urlprefix{URL }\fi" write$ newline$ } EXECUTE {begin.bib} EXECUTE {init.state.consts} ITERATE {call.type$} FUNCTION {end.bib} { newline$ "\end{thebibliography}" write$ newline$ } EXECUTE {end.bib} %% End of customized bst file %% %% End of file `PSFG.bst'.