* rseq 5.41 rsequence calculated from encoded sequences from: * encode 1.41; encoding of sequences in * * 2007/03/21 19:45:35, 2007/03/21 19:45:35, version = 3.00 of lambdacicro.inst Lambda cI/cro sites 2007 Mar 21 * * genomic probabilities from: * the composition file is empty. * (equal mononucleotides assumed) * the genomic composition used is: a = 1, c = 1, g = 1, t = 1 * * genomic information, hg: 2.00000 bits/base * * -100 100 is the range * * l position in aligned set * a..t number of each base at the position l * rs(l) rsequence(l) * rs rsequence, running sum of rs(l) * var(hnb) variance of hnb * sum-var running sum of var(hnb) * n(l) number of sequence examples at l * e(hnb) expectation of hnb * f flag for calculation of e(hnb) and var(hnb): * e = exact, a = approximation * * l a c g t rs(l) rs var(hnb) sum-var n(l) e(hnb) f -100 5 0 3 4 0.24507 0.24507 2.7693e-02 2.7693e-02 12 1.79966 e -99 4 1 3 4 -0.05573 0.18934 2.7693e-02 5.5386e-02 12 1.79966 e -98 3 5 2 2 -0.08826 0.10108 2.7693e-02 8.3079e-02 12 1.79966 e -97 5 1 1 5 0.14964 0.25072 2.7693e-02 1.1077e-01 12 1.79966 e -96 1 4 2 5 0.01550 0.26622 2.7693e-02 1.3847e-01 12 1.79966 e -95 2 2 2 6 0.00718 0.27340 2.7693e-02 1.6616e-01 12 1.79966 e -94 3 4 2 3 -0.15949 0.11391 2.7693e-02 1.9385e-01 12 1.79966 e -93 2 2 5 3 -0.08826 0.02565 2.7693e-02 2.2154e-01 12 1.79966 e -92 1 4 3 4 -0.05573 -0.03008 2.7693e-02 2.4924e-01 12 1.79966 e -91 2 4 3 3 -0.15949 -0.18957 2.7693e-02 2.7693e-01 12 1.79966 e -90 1 3 3 5 -0.02535 -0.21492 2.7693e-02 3.0462e-01 12 1.79966 e -89 0 5 0 7 0.81979 0.60486 2.7693e-02 3.3232e-01 12 1.79966 e -88 2 3 2 5 -0.08826 0.51660 2.7693e-02 3.6001e-01 12 1.79966 e -87 4 2 1 5 0.01550 0.53210 2.7693e-02 3.8770e-01 12 1.79966 e -86 4 1 2 5 0.01550 0.54760 2.7693e-02 4.1540e-01 12 1.79966 e -85 5 3 2 2 -0.08826 0.45934 2.7693e-02 4.4309e-01 12 1.79966 e -84 3 3 2 4 -0.15949 0.29985 2.7693e-02 4.7078e-01 12 1.79966 e -83 4 3 2 3 -0.15949 0.14037 2.7693e-02 4.9847e-01 12 1.79966 e -82 1 2 1 8 0.38136 0.52173 2.7693e-02 5.2617e-01 12 1.79966 e -81 3 1 0 8 0.61094 1.13266 2.7693e-02 5.5386e-01 12 1.79966 e -80 4 2 5 1 0.01550 1.14816 2.7693e-02 5.8155e-01 12 1.79966 e -79 4 6 1 1 0.17384 1.32201 2.7693e-02 6.0925e-01 12 1.79966 e -78 3 3 2 4 -0.15949 1.16252 2.7693e-02 6.3694e-01 12 1.79966 e -77 4 5 1 2 0.01550 1.17802 2.7693e-02 6.6463e-01 12 1.79966 e -76 4 1 2 5 0.01550 1.19352 2.7693e-02 6.9233e-01 12 1.79966 e -75 4 1 3 4 -0.05573 1.13779 2.7693e-02 7.2002e-01 12 1.79966 e -74 2 5 1 4 0.01550 1.15329 2.7693e-02 7.4771e-01 12 1.79966 e -73 2 1 4 5 0.01550 1.16879 2.7693e-02 7.7540e-01 12 1.79966 e -72 2 5 2 3 -0.08826 1.08053 2.7693e-02 8.0310e-01 12 1.79966 e -71 3 2 3 4 -0.15949 0.92104 2.7693e-02 8.3079e-01 12 1.79966 e -70 2 3 3 4 -0.15949 0.76155 2.7693e-02 8.5848e-01 12 1.79966 e -69 3 5 3 1 -0.02535 0.73619 2.7693e-02 8.8618e-01 12 1.79966 e -68 0 4 2 6 0.34051 1.07671 2.7693e-02 9.1387e-01 12 1.79966 e -67 3 2 3 4 -0.15949 0.91722 2.7693e-02 9.4156e-01 12 1.79966 e -66 1 4 2 5 0.01550 0.93272 2.7693e-02 9.6926e-01 12 1.79966 e -65 4 4 2 2 -0.11864 0.81408 2.7693e-02 9.9695e-01 12 1.79966 e -64 4 3 0 5 0.24507 1.05915 2.7693e-02 1.0246e+00 12 1.79966 e -63 3 1 5 3 -0.02535 1.03380 2.7693e-02 1.0523e+00 12 1.79966 e -62 4 3 2 3 -0.15949 0.87431 2.7693e-02 1.0800e+00 12 1.79966 e -61 2 4 1 5 0.01550 0.88981 2.7693e-02 1.1077e+00 12 1.79966 e -60 6 1 3 2 0.07008 0.95989 2.7693e-02 1.1354e+00 12 1.79966 e -59 2 3 1 6 0.07008 1.02998 2.7693e-02 1.1631e+00 12 1.79966 e -58 4 3 1 4 -0.05573 0.97425 2.7693e-02 1.1908e+00 12 1.79966 e -57 4 4 0 4 0.21470 1.18894 2.7693e-02 1.2185e+00 12 1.79966 e -56 7 2 0 3 0.41523 1.60417 2.7693e-02 1.2462e+00 12 1.79966 e -55 4 2 3 3 -0.15949 1.44468 2.7693e-02 1.2739e+00 12 1.79966 e -54 5 3 1 3 -0.02535 1.41933 2.7693e-02 1.3016e+00 12 1.79966 e -53 3 1 3 5 -0.02535 1.39398 2.7693e-02 1.3293e+00 12 1.79966 e -52 3 3 3 3 -0.20034 1.19364 2.7693e-02 1.3570e+00 12 1.79966 e -51 5 3 2 2 -0.08826 1.10538 2.7693e-02 1.3847e+00 12 1.79966 e -50 0 4 2 6 0.34051 1.44589 2.7693e-02 1.4123e+00 12 1.79966 e -49 0 7 1 4 0.51899 1.96487 2.7693e-02 1.4400e+00 12 1.79966 e -48 3 4 2 3 -0.15949 1.80538 2.7693e-02 1.4677e+00 12 1.79966 e -47 3 4 1 4 -0.05573 1.74965 2.7693e-02 1.4954e+00 12 1.79966 e -46 1 6 4 1 0.17384 1.92350 2.7693e-02 1.5231e+00 12 1.79966 e -45 3 4 1 4 -0.05573 1.86777 2.7693e-02 1.5508e+00 12 1.79966 e -44 1 3 5 3 -0.02535 1.84241 2.7693e-02 1.5785e+00 12 1.79966 e -43 3 3 2 4 -0.15949 1.68293 2.7693e-02 1.6062e+00 12 1.79966 e -42 4 1 4 3 -0.05573 1.62720 2.7693e-02 1.6339e+00 12 1.79966 e -41 5 1 4 2 0.01550 1.64269 2.7693e-02 1.6616e+00 12 1.79966 e -40 3 1 2 6 0.07008 1.71278 2.7693e-02 1.6893e+00 12 1.79966 e -39 4 1 4 3 -0.05573 1.65705 2.7693e-02 1.7170e+00 12 1.79966 e -38 6 1 4 1 0.17384 1.83089 2.7693e-02 1.7447e+00 12 1.79966 e -37 4 3 1 4 -0.05573 1.77516 2.7693e-02 1.7724e+00 12 1.79966 e -36 7 1 1 3 0.24856 2.02372 2.7693e-02 1.8000e+00 12 1.79966 e -35 4 2 1 5 0.01550 2.03922 2.7693e-02 1.8277e+00 12 1.79966 e -34 7 0 0 5 0.81979 2.85901 2.7693e-02 1.8554e+00 12 1.79966 e -33 1 5 2 4 0.01550 2.87451 2.7693e-02 1.8831e+00 12 1.79966 e -32 5 1 0 6 0.47465 3.34916 2.7693e-02 1.9108e+00 12 1.79966 e -31 6 1 2 3 0.07008 3.41924 2.7693e-02 1.9385e+00 12 1.79966 e -30 4 1 1 6 0.17384 3.59309 2.7693e-02 1.9662e+00 12 1.79966 e -29 1 5 1 5 0.14964 3.74272 2.7693e-02 1.9939e+00 12 1.79966 e -28 4 5 0 3 0.24507 3.98780 2.7693e-02 2.0216e+00 12 1.79966 e -27 5 5 1 1 0.14964 4.13743 2.7693e-02 2.0493e+00 12 1.79966 e -26 1 7 1 3 0.24856 4.38599 2.7693e-02 2.0770e+00 12 1.79966 e -25 1 4 5 2 0.01550 4.40149 2.7693e-02 2.1047e+00 12 1.79966 e -24 2 4 3 3 -0.15949 4.24200 2.7693e-02 2.1324e+00 12 1.79966 e -23 3 6 1 2 0.07008 4.31209 2.7693e-02 2.1601e+00 12 1.79966 e -22 4 4 3 1 -0.05573 4.25636 2.7693e-02 2.1877e+00 12 1.79966 e -21 2 2 6 2 0.00718 4.26354 2.7693e-02 2.2154e+00 12 1.79966 e -20 4 1 3 4 -0.05573 4.20781 2.7693e-02 2.2431e+00 12 1.79966 e -19 1 3 6 2 0.07008 4.27789 2.7693e-02 2.2708e+00 12 1.79966 e -18 5 0 5 2 0.31630 4.59419 2.7693e-02 2.2985e+00 12 1.79966 e -17 1 2 2 7 0.18565 4.77985 2.7693e-02 2.3262e+00 12 1.79966 e -16 4 0 5 3 0.24507 5.02492 2.7693e-02 2.3539e+00 12 1.79966 e -15 5 1 2 4 0.01550 5.04042 2.7693e-02 2.3816e+00 12 1.79966 e -14 6 2 2 2 0.00718 5.04760 2.7693e-02 2.4093e+00 12 1.79966 e -13 6 2 0 4 0.34051 5.38811 2.7693e-02 2.4370e+00 12 1.79966 e -12 6 1 0 5 0.47465 5.86275 2.7693e-02 2.4647e+00 12 1.79966 e -11 7 2 1 2 0.18565 6.04841 2.7693e-02 2.4924e+00 12 1.79966 e -10 5 0 2 5 0.31630 6.36471 2.7693e-02 2.5201e+00 12 1.79966 e -9 1 2 1 8 0.38136 6.74607 2.7693e-02 2.5478e+00 12 1.79966 e -8 1 2 0 9 0.75881 7.50488 2.7693e-02 2.5755e+00 12 1.79966 e -7 12 0 0 0 1.79966 9.30454 2.7693e-02 2.6031e+00 12 1.79966 e -6 3 3 0 6 0.29966 9.60420 2.7693e-02 2.6308e+00 12 1.79966 e -5 0 12 0 0 1.79966 11.40386 2.7693e-02 2.6585e+00 12 1.79966 e -4 9 1 0 2 0.75881 12.16266 2.7693e-02 2.6862e+00 12 1.79966 e -3 0 11 0 1 1.38584 13.54850 2.7693e-02 2.7139e+00 12 1.79966 e -2 0 7 1 4 0.51899 14.06749 2.7693e-02 2.7416e+00 12 1.79966 e -1 0 1 9 2 0.75881 14.82630 2.7693e-02 2.7693e+00 12 1.79966 e 0 1 5 5 1 0.14964 14.97593 2.7693e-02 2.7970e+00 12 1.79966 e 1 2 9 1 0 0.75881 15.73474 2.7693e-02 2.8247e+00 12 1.79966 e 2 4 1 7 0 0.51899 16.25373 2.7693e-02 2.8524e+00 12 1.79966 e 3 1 0 11 0 1.38584 17.63957 2.7693e-02 2.8801e+00 12 1.79966 e 4 2 0 1 9 0.75881 18.39837 2.7693e-02 2.9078e+00 12 1.79966 e 5 0 0 12 0 1.79966 20.19803 2.7693e-02 2.9355e+00 12 1.79966 e 6 6 0 3 3 0.29966 20.49769 2.7693e-02 2.9632e+00 12 1.79966 e 7 0 0 0 12 1.79966 22.29735 2.7693e-02 2.9908e+00 12 1.79966 e 8 9 0 2 1 0.75881 23.05616 2.7693e-02 3.0185e+00 12 1.79966 e 9 8 1 2 1 0.38136 23.43752 2.7693e-02 3.0462e+00 12 1.79966 e 10 5 2 0 5 0.31630 23.75382 2.7693e-02 3.0739e+00 12 1.79966 e 11 2 1 2 7 0.18565 23.93947 2.7693e-02 3.1016e+00 12 1.79966 e 12 5 0 1 6 0.47465 24.41412 2.7693e-02 3.1293e+00 12 1.79966 e 13 4 0 2 6 0.34051 24.75463 2.7693e-02 3.1570e+00 12 1.79966 e 14 2 2 2 6 0.00718 24.76181 2.7693e-02 3.1847e+00 12 1.79966 e 15 4 2 1 5 0.01550 24.77731 2.7693e-02 3.2124e+00 12 1.79966 e 16 3 5 0 4 0.24507 25.02238 2.7693e-02 3.2401e+00 12 1.79966 e 17 7 2 2 1 0.18565 25.20804 2.7693e-02 3.2678e+00 12 1.79966 e 18 2 5 0 5 0.31630 25.52434 2.7693e-02 3.2955e+00 12 1.79966 e 19 2 6 3 1 0.07008 25.59442 2.7693e-02 3.3232e+00 12 1.79966 e 20 4 3 1 4 -0.05573 25.53869 2.7693e-02 3.3509e+00 12 1.79966 e 21 2 6 2 2 0.00718 25.54587 2.7693e-02 3.3785e+00 12 1.79966 e 22 1 3 4 4 -0.05573 25.49014 2.7693e-02 3.4062e+00 12 1.79966 e 23 2 1 6 3 0.07008 25.56022 2.7693e-02 3.4339e+00 12 1.79966 e 24 3 3 4 2 -0.15949 25.40074 2.7693e-02 3.4616e+00 12 1.79966 e 25 2 5 4 1 0.01550 25.41624 2.7693e-02 3.4893e+00 12 1.79966 e 26 3 1 7 1 0.24856 25.66480 2.7693e-02 3.5170e+00 12 1.79966 e 27 1 1 5 5 0.14964 25.81443 2.7693e-02 3.5447e+00 12 1.79966 e 28 3 0 5 4 0.24507 26.05950 2.7693e-02 3.5724e+00 12 1.79966 e 29 5 1 5 1 0.14964 26.20914 2.7693e-02 3.6001e+00 12 1.79966 e 30 6 1 1 4 0.17384 26.38299 2.7693e-02 3.6278e+00 12 1.79966 e 31 3 2 1 6 0.07008 26.45307 2.7693e-02 3.6555e+00 12 1.79966 e 32 6 0 1 5 0.47465 26.92772 2.7693e-02 3.6832e+00 12 1.79966 e 33 4 2 5 1 0.01550 26.94322 2.7693e-02 3.7109e+00 12 1.79966 e 34 5 0 0 7 0.81979 27.76301 2.7693e-02 3.7386e+00 12 1.79966 e 35 5 1 2 4 0.01550 27.77851 2.7693e-02 3.7663e+00 12 1.79966 e 36 3 1 1 7 0.24856 28.02707 2.7693e-02 3.7939e+00 12 1.79966 e 37 4 1 3 4 -0.05573 27.97134 2.7693e-02 3.8216e+00 12 1.79966 e 38 1 4 1 6 0.17384 28.14518 2.7693e-02 3.8493e+00 12 1.79966 e 39 3 4 1 4 -0.05573 28.08945 2.7693e-02 3.8770e+00 12 1.79966 e 40 6 2 1 3 0.07008 28.15953 2.7693e-02 3.9047e+00 12 1.79966 e 41 2 4 1 5 0.01550 28.17503 2.7693e-02 3.9324e+00 12 1.79966 e 42 3 4 1 4 -0.05573 28.11930 2.7693e-02 3.9601e+00 12 1.79966 e 43 4 2 3 3 -0.15949 27.95981 2.7693e-02 3.9878e+00 12 1.79966 e 44 3 5 3 1 -0.02535 27.93446 2.7693e-02 4.0155e+00 12 1.79966 e 45 4 1 4 3 -0.05573 27.87873 2.7693e-02 4.0432e+00 12 1.79966 e 46 1 4 6 1 0.17384 28.05258 2.7693e-02 4.0709e+00 12 1.79966 e 47 4 1 4 3 -0.05573 27.99685 2.7693e-02 4.0986e+00 12 1.79966 e 48 3 2 4 3 -0.15949 27.83736 2.7693e-02 4.1263e+00 12 1.79966 e 49 4 1 7 0 0.51899 28.35634 2.7693e-02 4.1540e+00 12 1.79966 e 50 6 2 4 0 0.34051 28.69685 2.7693e-02 4.1816e+00 12 1.79966 e 51 2 2 3 5 -0.08826 28.60859 2.7693e-02 4.2093e+00 12 1.79966 e 52 3 3 3 3 -0.20034 28.40825 2.7693e-02 4.2370e+00 12 1.79966 e 53 5 3 1 3 -0.02535 28.38290 2.7693e-02 4.2647e+00 12 1.79966 e 54 3 1 3 5 -0.02535 28.35755 2.7693e-02 4.2924e+00 12 1.79966 e 55 3 3 2 4 -0.15949 28.19806 2.7693e-02 4.3201e+00 12 1.79966 e 56 3 0 2 7 0.41523 28.61328 2.7693e-02 4.3478e+00 12 1.79966 e 57 4 0 4 4 0.21470 28.82798 2.7693e-02 4.3755e+00 12 1.79966 e 58 4 1 3 4 -0.05573 28.77225 2.7693e-02 4.4032e+00 12 1.79966 e 59 6 1 3 2 0.07008 28.84234 2.7693e-02 4.4309e+00 12 1.79966 e 60 2 3 1 6 0.07008 28.91242 2.7693e-02 4.4586e+00 12 1.79966 e 61 5 1 4 2 0.01550 28.92792 2.7693e-02 4.4863e+00 12 1.79966 e 62 3 2 3 4 -0.15949 28.76843 2.7693e-02 4.5140e+00 12 1.79966 e 63 3 5 1 3 -0.02535 28.74308 2.7693e-02 4.5417e+00 12 1.79966 e 64 5 0 3 4 0.24507 28.98815 2.7693e-02 4.5693e+00 12 1.79966 e 65 2 2 4 4 -0.11864 28.86951 2.7693e-02 4.5970e+00 12 1.79966 e 66 5 2 4 1 0.01550 28.88501 2.7693e-02 4.6247e+00 12 1.79966 e 67 4 3 2 3 -0.15949 28.72552 2.7693e-02 4.6524e+00 12 1.79966 e 68 6 2 4 0 0.34051 29.06603 2.7693e-02 4.6801e+00 12 1.79966 e 69 1 3 5 3 -0.02535 29.04068 2.7693e-02 4.7078e+00 12 1.79966 e 70 4 3 3 2 -0.15949 28.88119 2.7693e-02 4.7355e+00 12 1.79966 e 71 4 3 2 3 -0.15949 28.72170 2.7693e-02 4.7632e+00 12 1.79966 e 72 3 2 5 2 -0.08826 28.63344 2.7693e-02 4.7909e+00 12 1.79966 e 73 5 4 1 2 0.01550 28.64894 2.7693e-02 4.8186e+00 12 1.79966 e 74 4 1 5 2 0.01550 28.66444 2.7693e-02 4.8463e+00 12 1.79966 e 75 4 3 1 4 -0.05573 28.60871 2.7693e-02 4.8740e+00 12 1.79966 e 76 5 2 1 4 0.01550 28.62421 2.7693e-02 4.9017e+00 12 1.79966 e 77 2 1 5 4 0.01550 28.63971 2.7693e-02 4.9294e+00 12 1.79966 e 78 4 2 3 3 -0.15949 28.48022 2.7693e-02 4.9571e+00 12 1.79966 e 79 1 1 6 4 0.17384 28.65407 2.7693e-02 4.9847e+00 12 1.79966 e 80 1 5 2 4 0.01550 28.66956 2.7693e-02 5.0124e+00 12 1.79966 e 81 8 0 1 3 0.61094 29.28050 2.7693e-02 5.0401e+00 12 1.79966 e 82 8 1 2 1 0.38136 29.66186 2.7693e-02 5.0678e+00 12 1.79966 e 83 3 2 3 4 -0.15949 29.50237 2.7693e-02 5.0955e+00 12 1.79966 e 84 4 2 3 3 -0.15949 29.34289 2.7693e-02 5.1232e+00 12 1.79966 e 85 2 2 3 5 -0.08826 29.25463 2.7693e-02 5.1509e+00 12 1.79966 e 86 5 2 1 4 0.01550 29.27012 2.7693e-02 5.1786e+00 12 1.79966 e 87 5 1 2 4 0.01550 29.28562 2.7693e-02 5.2063e+00 12 1.79966 e 88 5 2 3 2 -0.08826 29.19736 2.7693e-02 5.2340e+00 12 1.79966 e 89 7 0 5 0 0.81979 30.01715 2.7693e-02 5.2617e+00 12 1.79966 e 90 5 3 3 1 -0.02535 29.99180 2.7693e-02 5.2894e+00 12 1.79966 e 91 3 3 4 2 -0.15949 29.83231 2.7693e-02 5.3171e+00 12 1.79966 e 92 4 3 4 1 -0.05573 29.77658 2.7693e-02 5.3448e+00 12 1.79966 e 93 3 5 2 2 -0.08826 29.68832 2.7693e-02 5.3724e+00 12 1.79966 e 94 3 2 4 3 -0.15949 29.52883 2.7693e-02 5.4001e+00 12 1.79966 e 95 6 2 2 2 0.00718 29.53601 2.7693e-02 5.4278e+00 12 1.79966 e 96 5 2 4 1 0.01550 29.55151 2.7693e-02 5.4555e+00 12 1.79966 e 97 5 1 1 5 0.14964 29.70115 2.7693e-02 5.4832e+00 12 1.79966 e 98 2 2 5 3 -0.08826 29.61289 2.7693e-02 5.5109e+00 12 1.79966 e 99 4 3 1 4 -0.05573 29.55716 2.7693e-02 5.5386e+00 12 1.79966 e 100 4 3 0 5 0.24507 29.80223 2.7693e-02 5.5663e+00 12 1.79966 e * rsequence = 29.80223 +/- 2.35930 bits/site