* Color scheme for DNA and amino acids for the makelogo and lister programs * version = 3.00 of colors 2007 Mar 31 * 2007 Mar 31, 2.03: lower case: DNA/RNA, upper case: amino acids * 2007 Mar 30, 2.03: no blank lines, return to original scheme * 2007 Mar 30, 2.02: backup * 2007 Mar 16, 2.01: G is black for glycine; g is orange for guanine * 2007 Mar 16, 2.00: Set all protein letters to BLACK * 2004 Apr 27, 1.00: original color scheme without protein * * see: * https://alum.mit.edu/www/toms/delila/makelogo.html * https://alum.mit.edu/www/toms/delila/lister.html * * Dr. Thomas D. Schneider * toms@alum.mit.edu * permanent email: toms@alum.mit.edu (use only if first address fails) * https://alum.mit.edu/www/toms/ * * color order is red-green-blue * * green: * This makes the green slightly less dark on the Tektronix Phaser 140: a 0.182082 1 0.181899 * * blue: * This combination of red, green and blue makes a pretty egg shell blue color * on the Tektronix colorquick printer after processing by Freedom of the Press * to convert from PostScript 1991 January 16 c 0 0.9372 1 * * orange: g 1 0.7 0 * * red: t 1 0 0 u 1 0 0 * * The protein colors are based on the divisions given by: * B. Lewin in Genes IV, * Oxford University Press, Oxford, (1990), p. 8. * (slightly modified) * * polar are GREEN G 0 1 0 S 0 1 0 T 0 1 0 Y 0 1 0 C 0 1 0 * neutral are purple N 1 0 1 Q 1 0 1 * * basic BLUE K 0 0 1 R 0 0 1 H 0 0 1 * * acidic RED D 1 0 0 E 1 0 0 * * the hydrophobic amino acids remain black P 0 0 0 A 0 0 0 W 0 0 0 F 0 0 0 L 0 0 0 I 0 0 0 M 0 0 0 V 0 0 0