ribl "p10"
* Ri 2.69
*
* Ri(b,l) table is from:
** rseq 5.39 rsequence calculated from encoded sequences from:
** encode 1.41; encoding of sequences in
** * 2003/04/23 22:04:54, 1999/05/04 14:41:13, inst
*
* BOOK/INST sequences are from:
* 2003/04/23 22:04:54, 1999/05/04 14:41:13, inst
* title "inst";
*
* PARAMETERS FOR Ri:
* -1 4 from-to
* 1 column of value file
* -2147483647.000000 2147483647.000000 lowest to highest Ri selected
* -2147483647.000000 2147483647.000000 lowest to highest Value selected
* not printing sequences to sequ
* printing sequences to rixyin
* -: whole line printed when partial site
* using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2
*
* i alignmenttype first, book, instructions
* Ri(a,l) Ri(c,l) Ri(g,l) Ri(t,l) l a c g t
-1 4 frombase, tobase
-2.129296 -1.226594 -2.404931 1.650922 -1 23 43 19 316
1.890173 -6.660036 -5.067896 -2.009002 0 373 0 3 25
0.061387 -0.608464 -0.980433 0.830957 1 105 66 51 179
1.061387 -0.980433 -0.871499 -0.243467 2 210 51 55 85
1.061387 -0.052946 -1.443405 -0.819968 3 210 97 37 57
-6.660036 -2.404931 -3.193427 1.882417 4 0 19 11 371
*
4.783894 bits = mean (Rsequence of selected region)
2.128061 bits = standard deviation
*
8.377244 bits = Ri of consensus sequence from -1 to 4
-19.129274 bits = Ri of anticonsensus sequence from -1 to 4
*
-7.329533 bits = average Ri for random sequence from -1 to 4
*
401 n, number of sequences used to create the matrix
*
asymmetric symmetry of the matrix
*
-5000.000000 Ri bound: lower bound on Ri
100.000000 Z bound: lower bound on Z
1.000000 P bound: upper probability
*
l extreme: char; h or l, the high or low extreme to be defined
4.0 wavelocation: real; the location in bases of the extreme
1.0 wavebit: real; the location in bits of the extreme
0.5 waveamplitude: real; the amplitude of the wave in bits
10.6 wavelength: real; the wave length of the wave in bases
0.4 0.4 0.0 dashon, dashoff, dashoffset (in bases)
0.0 thickness: real; the thickness of the cosine wave. <=0 means default
.