Fur: Discovery of Fur binding site clusters in Escherichia coli by information theory models

• BiBTeX reference:

  @article{Chen-Lewis.Schneider2007,
  author = "Z. Chen
   and K. A. Lewis
   and R. K. Shultzaberger
   and I. G. Lyakhov
   and M. Zheng
   and B. Doan
   and G. Storz
   and T. D. Schneider",
  title = "Discovery of {Fur} binding site clusters in
  \emph{Escherichia coli} by information theory models",
  journal = "Nucleic Acids Res.",
  volume = "35",
  pages = "6762--6777",
  pmid = "17921503",
  year = "2007"}
  

  • PubMed entry
  • At Nucleic Acids Research: Full Text

Supplementary Material

• Predicted Fur clusters in the E. coli genome with Ri > 3 bits (24 site M9 model)

• Sequence walker analysis of oligos used in EMSA (PDF) (analysis directory)

• Ordered list of predicted Fur sites in the E. coli genome with Ri > 3 bits (original 11 site M12 model)

If you need background information about information theory you can explore my web site. You may find these two resources particularly useful:

• Information Theory Primer, With an Appendix on Logarithms
• A Glossary for Molecular Information Theory and the Delila System.
  A good starting point would be the definition of a bit.

Tom Schneider

Schneider Lab
origin: 2001 August 10
updated: 2018 Oct 28