* bits
* scan 3.42
* with matrix from:
***********************************************************
***********************************************************
* scan matrix is FROM = -9, TO = 9
* region used for the scan is FROM = -9, TO = 9
****************************************************
* Paramters used by scan: 
* todo:             2147483647
* cutDNRi:         -5.0
* cutUPRi:         2147483647.0
* cutDNZ:          0.0
* cutUPZ:          100.0
* cutDNP:          0.0
* cutUPP:          1.0
* fromwanted:       -9
* towanted:         9
* ways:             0
* sitedefinition:   define "fur-11M9" " w" "  " "  " -9.0 9.0
* (no control)
* (no control)
* (no control)
* Ri:4:1
* string: "" bits""
* (no control)
* (no control)
* (no control)
* (no control)
* .: end of print definitions
* DFi DFI: capitals mean data, scanfeatures, scaninst written
* n  normalizeRi: n: normal, s: Ri(l)-Ri(0), d: Ri(l)/Ri(0)
* -50 50  range to make the scaninst file (if made)
****************************************************
* Scan of book:
* 2006/10/26 02:29:21, 2006/10/26 02:29:21, exbD
*  mean =  18.083432
* stdev =   4.104552
*
* lowest   Ri cutoff =  -5.000000
* highest  Ri cutoff = 2147483647.000000
* lowest    Z cutoff =   0.000000
* highest   Z cutoff = 100.000000
* lowest  probability =   0.000000
* highest probability =   1.000000
* The sequences in the book will be scanned one way
* since the matrix is symmetric
*
* DEFINITION OF THE DATA COLUMNS:
* 1 piece number
* 2 piece length
* 3 piece name
* 4 piece coordinate
* 5 matrix orientation (+1 = as in book, -1 = complement)
* 6 Ri evaluation (bits per site)
* 7 Z
* 8 probability
* 9 0, meaning: not normalizing Ri
*
        1       107 exbD       23        1  -4.988864  -5.621148   0.000000 0
        1       107 exbD       89        1  -4.988864  -5.621148   0.000000 0
* 2 sites found in piece exbD                                                                                                
* 89 positions evaluated
*
* 2 sites found in this book in
* 89 total positions evaluated
* 5.4757334310 effective Rfrequency (bits per site)