- 1 - * piece 1, yoeA, yoeA, config: linear, direction: +, begin: 1, end: 123 * *10 * *20 * *30 * 5' g c t a t c g c g a a c a t a a a t g a a a a t a a t t a t c a t t a c a g 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd64.yoeA g-a-t-----------t-t-----c-----------] Fur consensus.1.2.3.9.10.13 [---t-------g---------------------t-c Fur consensus.3.7.18.19 a a c a t a a a t g a a a a t a a t t fur-11M9 3.5 bits a t a a a t g a a a a t a a t t a t c fur-11M9 2.3 bits a a t g a a a a t a a t t a t c a t t fur-11M9 25.7 bits g a a a a t a a t t a t c a t t a c a fur-11M9 5.8 bits a a t a a t t a t c a t t a c a g ... fur-11M9 t a t c a t t a c a g ... fur-11M9 t a c a g ... fur-11M9 a a c a t a a a t g a a a a t a a t t fur-24M9 4.0 bits a a t g a a a a t a a t t a t c a t t fur-24M9 27.4 bits g a a a a t a a t t a t c a t t a c a fur-24M9 5.9 bits a a t a a t t a t c a t t a c a g ... fur-24M9 * - 2 - t a t c a t t a c a g ... fur-24M9 t a c a g ... fur-24M9 *40 * *50 * *60 * *70 * 5' t a a t c a t t t g t a c t a c g a t c g c g c g a a g c g c g a t c g t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)- ... odd64.yoeA [-----------] hairpin a ... fur-11M9 [-------------------------------------------] hairpin+ a ... fur-24M9 ... t a fur-11M9 7.7 bits ... t a a t c a t t fur-11M9 12.6 bits ... t a a t c a t t t g t a c t fur-11M9 5.0 bits ... t a fur-24M9 6.9 bits ... t a a t c a t t fur-24M9 9.0 bits ... t a a t c a t t t g t a c t fur-24M9 4.7 bits *80 * *90 * *100 * *110 * - 3 - 5' g t a c a a a t g a t t a c t g t a a t g a t a a t t a t t t t c a t t t a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd64.yoeA ... g t a c a a a t g a t t a c t g t a fur-11M9 5.0 bits g-a---------------t-----c-------a---] Fur consensus.1.2.10.13.17 ... g t a c a a a t g a t t a c t g t a fur-24M9 4.7 bits [-----------g-------a-----------a-t- ... Fur consensus.7.11.17.18.19 a a t g a t t a c t g t a a t g a t a fur-11M9 12.6 bits t a c t g t a a t g a t a a t t a t t fur-11M9 7.7 bits t g t a a t g a t a a t t a t t t t c fur-11M9 5.8 bits a a t g a t a a t t a t t t t c a t t fur-11M9 25.7 bits g a t a a t t a t t t t c a t t t a ... fur-11M9 a a t t a t t t t c a t t t a ... fur-11M9 a a t g a t t a c t g t a a t g a t a fur-24M9 9.0 bits t a c t g t a a t g a t a a t t a t t fur-24M9 6.9 bits t g t a a t g a t a a t t a t t t t c fur-24M9 5.9 bits a a t g a t a a t t a t t t t c a t t fur-24M9 27.4 bits * - 4 - a a t t a t t t t c a t t t a ... fur-24M9 * *120 5' t g t t c g c g a 3' ... )-)-)-)-)-)-)-)-) odd64.yoeA 86.5 bits ... c Fur consensus.7.11.17.18.19 ... t fur-11M9 2.3 bits ... t g t t fur-11M9 3.5 bits ... t g t t fur-24M9 4.0 bits * - 5 - * piece 2, fepD-entS, fepD-entS, config: linear, direction: +, begin: 1, end: 123 * *10 * *20 * *30 * 5' g c t a t c g c g a a c t t c c a t g a t a a t g a a a t t a a t t a t c g 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd64.fepD-entS [---------------t-t-a---c-----------] Fur consensus.9.10.11.13 [---t---a---g-------------a- ... Fur consensus.3.5.7.14 c a t g a t a a t g a a a t t a a t t fur-11M9 10.5 bits a a t g a a a t t a a t t a t c g ... fur-11M9 a t t a a t t a t c g ... fur-11M9 t a t c g ... fur-11M9 c a t g a t a a t g a a a t t a a t t fur-24M9 8.9 bits a a t g a a a t t a a t t a t c g ... fur-24M9 a t t a a t t a t c g ... fur-24M9 t a t c g ... fur-24M9 *40 * *50 * *60 * *70 * 5' t t a t c g a t c t t a t t a c g a t c g c g c g a a g c g c g a t c g t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)- ... odd64.fepD-entS [-----------] hairpin a ... fur-11M9 ... --------] Fur consensus.3.5.7.14 a ... fur-24M9 * - 6 - [-------------------------------------------] hairpin+ ... t t fur-11M9 17.2 bits ... t t a t c g a t fur-11M9 14.0 bits ... t t a t c g a t c t t a t t fur-11M9 3.1 bits ... t t fur-24M9 19.4 bits ... t t a t c g a t fur-24M9 12.4 bits ... t t a t c g a t c t t a t t fur-24M9 1.7 bits *80 * *90 * *100 * *110 5' a t a a g a t c g a t a a c g a t a a t t a a t t t c a t t a t c a t g g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd64.fepD-entS ... a t a a g a t c g a t a a c g a t a fur-11M9 3.1 bits ... a t a a g a t c g a t a a c g a t a fur-24M9 1.7 bits [---------t-------t-----c---t---a---] Fur consensus.6.10.13.15.17 [-----------g---t---a---------------] Fur consensus.7.9.11 a t c g a t a a c g a t a a t t a a t fur-11M9 14.0 bits a a c g a t a a t t a a t t t c a t t fur-11M9 17.2 bits a a t t a a t t t c a t t a t c a t g fur-11M9 10.5 bits * - 7 - a t c g a t a a c g a t a a t t a a t fur-24M9 12.4 bits a a c g a t a a t t a a t t t c a t t fur-24M9 19.4 bits a a t t a a t t t c a t t a t c a t g fur-24M9 8.9 bits * *120 5' a g t t c g c g a 3' ... )-)-)-)-)-)-)-)-) odd64.fepD-entS 86.5 bits * - 8 - * piece 3, gpmA, gpmA, config: linear, direction: +, begin: 1, end: 99 * *10 * *20 * *30 * 5' g c t a t c g c g c a a t a t a a t g a g a a t t a t t a t c a t t a a a a 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd52.gpmA g---------------t-t-----c-----------] Fur consensus.1.9.10.13 [---t-------g---------------------t-c Fur consensus.3.7.18.19 c a a t a t a a t g a g a a t t a t t fur-11M9 8.0 bits t a t a a t g a g a a t t a t t a t c fur-11M9 7.7 bits a a t g a g a a t t a t t a t c a t t fur-11M9 24.3 bits g a g a a t t a t t a t c a t t a a a fur-11M9 3.7 bits a a t t a t t a t c a t t a a a a ... fur-11M9 c a a t a t a a t g a g a a t t a t t fur-24M9 5.6 bits t a t a a t g a g a a t t a t t a t c fur-24M9 7.5 bits a a t g a g a a t t a t t a t c a t t fur-24M9 27.4 bits g a g a a t t a t t a t c a t t a a a fur-24M9 1.4 bits a a t t a t t a t c a t t a a a a ... fur-24M9 *40 * *50 * *60 * *70 * 5' g a a c g a t c g c g c g a a g c g c g a t c g t t c t t t t a a t g a t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd52.gpmA * - 9 - [-----------] hairpin g-a---------------t- ... Fur consensus.1.2.10.13.17 [-------------------------------------------] hairpin+ [------- ... Fur consensus.7.11.19 t c t t t t a a t g a t a ... fur-11M9 t t t a a t g a t a ... fur-11M9 a a t g a t a ... fur-11M9 g a t a ... fur-11M9 ... g a fur-11M9 6.2 bits a ... fur-11M9 t c t t t t a a t g a t a ... fur-24M9 t t t a a t g a t a ... fur-24M9 a a t g a t a ... fur-24M9 g a t a ... fur-24M9 ... g a fur-24M9 4.1 bits a ... fur-24M9 *80 * *90 * 5' a t a a t t c t c a t t a t a t t g c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd52.gpmA 68.5 bits ... ----c-------a---] Fur consensus.1.2.10.13.17 ... ----g-------a---------------c Fur consensus.7.11.19 ... a t a a t t fur-11M9 6.2 bits * - 10 - ... a t a a t t c t c fur-11M9 3.7 bits ... a t a a t t c t c a t t fur-11M9 24.3 bits ... a t a a t t c t c a t t a t a fur-11M9 7.7 bits ... a t a a t t c t c a t t a t a t t g fur-11M9 8.0 bits ... a t a a t t fur-24M9 4.1 bits ... a t a a t t c t c fur-24M9 1.4 bits ... a t a a t t c t c a t t fur-24M9 27.4 bits ... a t a a t t c t c a t t a t a fur-24M9 7.5 bits ... a t a a t t c t c a t t a t a t t g fur-24M9 5.6 bits * - 11 - * piece 4, ryhB, ryhB, config: linear, direction: +, begin: 1, end: 99 * *10 * *20 * *30 * 5' g c t a t c g c g c g a g a c a a t a a t a a t c a t t c t c a t t c g c a 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd52.ryhB [---t-------g-----t-------------a---] Fur consensus.3.7.10.17 g-----------g-------a-----------a-t-] Fur consensus.1.7.11.17.18 c g a g a c a a t a a t a a t c a t t fur-11M9 10.4 bits g a c a a t a a t a a t c a t t c t c fur-11M9 0.9 bits a a t a a t a a t c a t t c t c a t t fur-11M9 22.0 bits a a t c a t t c t c a t t c g c a ... fur-11M9 c g a g a c a a t a a t a a t c a t t fur-24M9 8.3 bits g a c a a t a a t a a t c a t t c t c fur-24M9 1.4 bits a a t a a t a a t c a t t c t c a t t fur-24M9 25.2 bits a a t c a t t c t c a t t c g c a ... fur-24M9 *40 * *50 * *60 * *70 * 5' c t a c g a t c g c g c g a a g c g c g a t c g t a g t g c g a a t g a g a 3' ... (-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd52.ryhB [-----------] hairpin [-a-t-----------t-t- ... Fur consensus.2.3.9.10.13.19 [-------------------------------------------] hairpin+ [---t--- ... Fur consensus.3.13.17 a g t g c g a a t g a g a ... fur-11M9 a a t g a g a ... fur-11M9 * - 12 - g a g a ... fur-11M9 ... c t fur-11M9 9.7 bits a ... fur-11M9 a g t g c g a a t g a g a ... fur-24M9 a a t g a g a ... fur-24M9 g a g a ... fur-24M9 ... c t fur-24M9 8.2 bits a ... fur-24M9 *80 * *90 * 5' a t g a t t a t t a t t g t c t c g c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd52.ryhB 68.5 bits ... ----c-----------c Fur consensus.2.3.9.10.13.19 ... ----------------c-------a---] Fur consensus.3.13.17 ... a t g a t t fur-11M9 9.7 bits ... a t g a t t a t t a t t fur-11M9 22.0 bits ... a t g a t t a t t a t t g t c fur-11M9 0.9 bits ... a t g a t t a t t a t t g t c t c g fur-11M9 10.4 bits ... a t g a t t fur-24M9 8.2 bits * - 13 - ... a t g a t t a t t a t t fur-24M9 25.2 bits ... a t g a t t a t t a t t g t c fur-24M9 1.4 bits ... a t g a t t a t t a t t g t c t c g fur-24M9 8.3 bits * - 14 - * piece 5, fhuA, fhuA, config: linear, direction: +, begin: 1, end: 111 * *10 * *20 * *30 * 5' g c t a t c g c g t t a t c t t a t c t t t a t a a t a a t c a t t c t c g 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd58.fhuA g-a---a-----g-----t-------------a---] Fur consensus.1.2.4.7.10.17 g-----------g-------a-----a- ... Fur consensus.1.7.11.14.17.18 t t a t c t t a t c t t t a t a a t a fur-11M9 1.5 bits t a t c t t t a t a a t a a t c a t t fur-11M9 11.6 bits c t t t a t a a t a a t c a t t c t c fur-11M9 2.2 bits t a t a a t a a t c a t t c t c g ... fur-11M9 a a t c a t t c t c g ... fur-11M9 t a t c t t t a t a a t a a t c a t t fur-24M9 10.7 bits t a t a a t a a t c a t t c t c g ... fur-24M9 a a t c a t t c t c g ... fur-24M9 *40 * *50 * *60 * *70 * 5' t t t a c g t t a c g a t c g c g c g a a g c g c g a t c g t a a c g t a a 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd58.fhuA [-----------] hairpin a a c g t a a ... fur-11M9 ... ----a-t-] Fur consensus.1.7.11.14.17.18 a ... fur-11M9 * - 15 - [-------------------------------------------] hairpin+ a ... fur-24M9 a a c g t a a ... fur-24M9 ... t t fur-11M9 16.1 bits ... t t t a c g t t fur-11M9 6.3 bits ... t t fur-24M9 19.5 bits ... t t t a c g t t fur-24M9 4.9 bits *80 * *90 * *100 * *110 5' a c g a g a a t g a t t a t t a t a a a g a t a a g a t a a c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd58.fhuA 77.5 bits ... a c g a g a a t g a t t fur-11M9 6.3 bits ... a c g a g a a t g a t t a t t a t a fur-11M9 16.1 bits ... a c g a g a a t g a t t a t t a t a fur-24M9 19.5 bits ... a c g a g a a t g a t t fur-24M9 4.9 bits [---t-------------------c-----t---t-c Fur consensus.3.13.16.18.19 g a g a a t g a t t a t t a t a a a g fur-11M9 2.2 bits * - 16 - a a t g a t t a t t a t a a a g a t a fur-11M9 11.6 bits t a t t a t a a a g a t a a g a t a a fur-11M9 1.5 bits a a t g a t t a t t a t a a a g a t a fur-24M9 10.7 bits * - 17 - * piece 6, nohA, nohA, config: linear, direction: +, begin: 1, end: 99 * *10 * *20 * *30 * 5' g c t a t c g c g t a t g t a g a t g a t a a t c a t t a t c a c t t t a c 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd52.nohA [-a-t-a-----------t-----------------] Fur consensus.2.3.4.10 [-----------g---------------t---a---c Fur consensus.7.15.17.19 t a t g t a g a t g a t a a t c a t t fur-11M9 12.8 bits g t a g a t g a t a a t c a t t a t c fur-11M9 3.1 bits g a t g a t a a t c a t t a t c a c t fur-11M9 20.5 bits t a t g t a g a t g a t a a t c a t t fur-24M9 12.6 bits g t a g a t g a t a a t c a t t a t c fur-24M9 1.5 bits g a t g a t a a t c a t t a t c a c t fur-24M9 22.3 bits *40 * *50 * *60 * *70 * 5' g g a c g a t c g c g c g a a g c g c g a t c g t c c g t a a a g t g a t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd52.nohA [-----------] hairpin g---t---a---------t- ... Fur consensus.1.3.5.10.13 [-------------------------------------------] hairpin+ [------- ... Fur consensus.16.17.18 a g t g a t a ... fur-11M9 g a t a ... fur-11M9 a ... fur-11M9 a g t g a t a ... fur-24M9 * - 18 - g a t a ... fur-24M9 a ... fur-24M9 *80 * *90 * 5' a t g a t t a t c a t c t a c a t a c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd52.nohA 68.5 bits ... ----c-----------] Fur consensus.1.3.5.10.13 ... ----------------------t-a-t-] Fur consensus.16.17.18 ... a t g a t t a t c a t c fur-11M9 20.5 bits ... a t g a t t a t c a t c t a c fur-11M9 3.1 bits ... a t g a t t a t c a t c t a c a t a fur-11M9 12.8 bits ... a t g a t t a t c a t c fur-24M9 22.3 bits ... a t g a t t a t c a t c t a c fur-24M9 1.5 bits ... a t g a t t a t c a t c t a c a t a fur-24M9 12.6 bits * - 19 - * piece 7, oppA, oppA, config: linear, direction: +, begin: 1, end: 111 * *10 * *20 * *30 * 5' g c t a t c g c g t t c t t t a t t g g t a a t g a g a a t a a t t a a c a 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd58.oppA [-a-------------t-t-----c---------t-] Fur consensus.2.9.10.13.18 a t t g g t a a t g a g a a t a a t t fur-11M9 12.4 bits a a t g a g a a t a a t t a a c a ... fur-11M9 a t t g g t a a t g a g a a t a a t t fur-24M9 9.6 bits a a t g a g a a t a a t t a a c a ... fur-24M9 *40 * *50 * *60 * *70 * 5' a t t a a a g a a c g a t c g c g c g a a g c g c g a t c g t t c t t t a a 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd58.oppA [-----------] hairpin a ... fur-11M9 [-------------------------------------------] hairpin+ a ... fur-24M9 ... a t fur-11M9 18.7 bits ... a t fur-24M9 21.5 bits *80 * *90 * *100 * *110 5' t t g t t a a t t a t t c t c a t t a c c a a t a a a g a a c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd58.oppA 77.5 bits ... t t g t t a a t t a t t c t c a t t fur-11M9 18.7 bits * - 20 - ... t t g t t a a t t a t t c t c a t t fur-24M9 21.5 bits [-a---------g-------a-------------t-] Fur consensus.2.7.11.18 a a t t a t t c t c a t t a c c a a t fur-11M9 12.4 bits a a t t a t t c t c a t t a c c a a t fur-24M9 9.6 bits * - 21 - * piece 8, gspC, gspC, config: linear, direction: +, begin: 1, end: 99 * *10 * *20 * *30 * 5' g c t a t c g c g a t t a t t t t t a a t g t g a a t t a t t t c c a t a c 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd52.gspC t a t c g c g a t t a t t t t t a a t fur-11M9 3.1 bits a t t t t t a a t g t g a a t t a t t fur-11M9 5.7 bits a a t g t g a a t t a t t t c c a t a fur-11M9 12.2 bits a t t t t t a a t g t g a a t t a t t fur-24M9 3.3 bits a a t g t g a a t t a t t t c c a t a fur-24M9 14.4 bits *40 * *50 * *60 * *70 * 5' a a a c g a t c g c g c g a a g c g c g a t c g t t t g t a t g g a a a t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd52.gspC [-----------] hairpin t a t g g a a a t a ... fur-11M9 [-------------------------------------------] hairpin+ a a t a ... fur-11M9 t a t g g a a a t a ... fur-24M9 a a t a ... fur-24M9 *80 * *90 * 5' a t t c a c a t t a a a a a t a a t c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd52.gspC 68.5 bits ... a t t c a c a t t fur-11M9 12.2 bits * - 22 - ... a t t c a c a t t a a a a a t fur-11M9 5.7 bits ... a t t c a c a t t fur-24M9 14.4 bits ... a t t c a c a t t a a a a a t fur-24M9 3.3 bits * - 23 - * piece 9, yhaU, yhaU, config: linear, direction: +, begin: 1, end: 105 * *10 * *20 * *30 * 5' g c t a t c g c g g g t a a c a a t a a a a a t a a t c a g t a a t a t t a 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd55.yhaU a a c a a t a a a a a t a a t c a g t fur-11M9 9.8 bits a a t a a a a a t a a t c a g t a a t fur-11M9 12.2 bits a a a a a t a a t c a g t a a t a t t fur-11M9 12.2 bits a a t a a t c a g t a a t a t t a ... fur-11M9 a a c a a t a a a a a t a a t c a g t fur-24M9 8.7 bits a a t a a a a a t a a t c a g t a a t fur-24M9 10.9 bits a a a a a t a a t c a g t a a t a t t fur-24M9 13.8 bits a a t a a t c a g t a a t a t t a ... fur-24M9 *40 * *50 * *60 * *70 * 5' a a t a g a c g a t c g c g c g a a g c g c g a t c g t c t a t t t a a t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd55.yhaU [-----------] hairpin g- ... Fur consensus.1.2.5.13.14.19 [-------------------------------------------] hairpin+ a a t a ... fur-11M9 t t t a a t a ... fur-11M9 * - 24 - ... a a fur-11M9 6.4 bits a ... fur-11M9 t t t a a t a ... fur-24M9 a a t a ... fur-24M9 a ... fur-24M9 ... a a fur-24M9 5.2 bits *80 * *90 * *100 * 5' t t a c t g a t t a t t t t t a t t g t t a c c c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd55.yhaU 73.0 bits ... a-----a---------------c-a---------c Fur consensus.1.2.5.13.14.19 ... t t a c t g a t t a t t t t t fur-11M9 12.2 bits ... t t a c t g a t t a t t fur-11M9 6.4 bits ... t t a c t g a t t a t t t t t a t t fur-11M9 12.2 bits ... t t a c t g a t t a t t fur-24M9 5.2 bits ... t t a c t g a t t a t t t t t fur-24M9 13.8 bits ... t t a c t g a t t a t t t t t a t t fur-24M9 10.9 bits [-----a-----g-a---------c-a-------t-] Fur consensus.4.7.8.13.14.18 a c t g a t t a t t t t t a t t g t t fur-11M9 9.8 bits * - 25 - a c t g a t t a t t t t t a t t g t t fur-24M9 8.7 bits * - 26 - * piece 10, yahA, yahA, config: linear, direction: +, begin: 1, end: 111 * *10 * *20 * *30 * 5' g c t a t c g c g c a c a g a t a t a t t a a t g a t a a t c a c t a t c a 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd58.yahA g-a---------------t---------t-------] Fur consensus.1.2.10.15 [-----------g---t----------- ... Fur consensus.7.9.15.16.19 t a t a t t a a t g a t a a t c a c t fur-11M9 13.3 bits a t t a a t g a t a a t c a c t a t c fur-11M9 3.5 bits a a t g a t a a t c a c t a t c a ... fur-11M9 g a t a a t c a c t a t c a ... fur-11M9 t a t a t t a a t g a t a a t c a c t fur-24M9 14.5 bits a t t a a t g a t a a t c a c t a t c fur-24M9 1.6 bits a a t g a t a a t c a c t a t c a ... fur-24M9 g a t a a t c a c t a t c a ... fur-24M9 *40 * *50 * *60 * *70 * 5' c c a t a t c g a c g a t c g c g c g a a g c g c g a t c g t c g a t a t g 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd58.yahA [-----------] hairpin g-----a- ... Fur consensus.1.4.5.10.11.13 ... t-t-----c Fur consensus.7.9.15.16.19 t a t g ... fur-11M9 [-------------------------------------------] hairpin+ g ... fur-11M9 * - 27 - t a t g ... fur-24M9 ... c c fur-11M9 16.3 bits g ... fur-24M9 ... c c a t a fur-11M9 3.9 bits ... c c fur-24M9 18.6 bits ... c c a t a fur-24M9 1.7 bits *80 * *90 * *100 * *110 5' g t g a t a g t g a t t a t c a t t a a t a t a t c t g t g c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd58.yahA 77.5 bits ... a---------t-a---c-----------] Fur consensus.1.4.5.10.11.13 ... g t g a t a g t g a t t a t c fur-11M9 3.9 bits ... g t g a t a g t g a t t a t c a t t fur-11M9 16.3 bits ... g t g a t a g t g a t t a t c fur-24M9 1.7 bits ... g t g a t a g t g a t t a t c a t t fur-24M9 18.6 bits [-------a-------------------------t-c Fur consensus.5.18.19 g a t a g t g a t t a t c a t t a a t fur-11M9 3.5 bits a g t g a t t a t c a t t a a t a t a fur-11M9 13.3 bits * - 28 - g a t a g t g a t t a t c a t t a a t fur-24M9 1.6 bits a g t g a t t a t c a t t a a t a t a fur-24M9 14.5 bits * - 29 - * piece 11, fadD, fadD, config: linear, direction: +, begin: 1, end: 99 * *10 * *20 * *30 * 5' g c t a t c g c g t a c c a c t a t g a t a a t c a a t a t c a t a t g g g 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd52.fadD g---t-a-----------t---------t-------] Fur consensus.1.3.4.10.15 [-----------g---t-------------t-a-t-c Fur consensus.7.9.16.17.18.19 a t c g c g t a c c a c t a t g a t a fur-11M9 2.1 bits t a c c a c t a t g a t a a t c a a t fur-11M9 6.8 bits t a t g a t a a t c a a t a t c a t a fur-11M9 19.7 bits a a t c a a t a t c a t a t g g g ... fur-11M9 a t c g c g t a c c a c t a t g a t a fur-24M9 0.4 bits t a c c a c t a t g a t a a t c a a t fur-24M9 3.7 bits t a t g a t a a t c a a t a t c a t a fur-24M9 21.7 bits *40 * *50 * *60 * *70 * 5' t t a c g a t c g c g c g a a g c g c g a t c g t a a c c c a t a t g a t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd52.fadD [-----------] hairpin [------- ... Fur consensus.5.16.17.19 [-------------------------------------------] hairpin+ t a t g a t a ... fur-11M9 a a c c c a t a t g a t a ... fur-11M9 a ... fur-11M9 * - 30 - t a t g a t a ... fur-24M9 ... t t fur-11M9 3.8 bits a ... fur-24M9 *80 * *90 * 5' t t g a t t a t c a t a g t g g t a c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd52.fadD 68.5 bits ... a---------------------t-a---c Fur consensus.5.16.17.19 ... t t g a t t a t c a t a fur-11M9 19.7 bits ... t t g a t t fur-11M9 3.8 bits ... t t g a t t a t c a t a g t g g t a fur-11M9 6.8 bits ... t t g a t t a t c a t a fur-24M9 21.7 bits ... t t g a t t a t c a t a g t g g t a fur-24M9 3.7 bits * - 31 - * piece 12, ygaC, ygaC, config: linear, direction: +, begin: 1, end: 99 * *10 * *20 * *30 * 5' g c t a t c g c g t c c a g g g t a a t t t c g a c c a c t a t t t g c t a 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd52.ygaC t t c g a c c a c t a t t t g c t a ... fur-11M9 *40 * *50 * *60 * *70 * 5' t a a c g a t c g c g c g a a g c g c g a t c g t t a t a g c a a a t a g t 3' ... (-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd52.ygaC ... t fur-11M9 1.4 bits[-----------] hairpin a t a g c a a a t a g t ... fur-11M9 [-------------------------------------------] hairpin+ *80 * *90 * 5' g g t c g a a a t t a c c c t g g a c g c g a 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd52.ygaC 68.5 bits ... g g t c g a a fur-11M9 1.4 bits * - 32 - * piece 13, exbB, exbB, config: linear, direction: +, begin: 1, end: 107 * *10 * *20 * *30 * 5' g c t a a c g a c g t c g a a t t g a t a g t c g t t c t c a t t a c t a t 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd56.exbB [--------------------------------------------------------------------- ... exbB Natural sequence [-------------------------------] exbB Fur consensus marked on Eick-Helmerich/Braun figure 1 [-a-------------g-----a-a---t-------c Published Fur consensus applied to exbB [-------a---g-a-----a-------------t-c Fur consensus.5.7.8.11.18.19 a t t g a t a g t c g t t c t c a t t fur-11M9 17.5 bits a g t c g t t c t c a t t a c t a t ... fur-11M9 t c t c a t t a c t a t ... fur-11M9 a t t g a t a g t c g t t c t c a t t fur-24M9 19.1 bits a g t c g t t c t c a t t a c t a t ... fur-24M9 t c t c a t t a c t a t ... fur-24M9 *40 * *50 * *60 * *70 * 5' t t g c a t a c t g c c g c g c g a a g c g c g g c a g t a t g c a a a t a 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd56.exbB ... ------------------------] exbB Natural sequence t a t g c a a a t a ... fur-11M9 [-----------] hairpin a a t a ... fur-11M9 t a t g c a a a t a ... fur-24M9 a a t a ... fur-24M9 * - 33 - ... t fur-11M9 4.0 bits ... t t g c a t a fur-11M9 7.0 bits ... t fur-24M9 0.8 bits ... t t g c a t a fur-24M9 2.8 bits *80 * *90 * *100 * 5' g t a a t g a g a a c g a c t a t c a a t t c g a c g t c g t 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd56.exbB 74.5 bits ... g t a a t g a g a fur-11M9 7.0 bits ... g t a a t g a g a a c g a c t fur-11M9 4.0 bits ... g t a a t g a g a fur-24M9 2.8 bits ... g t a a t g a g a a c g a c t fur-24M9 0.8 bits [-------------------------------] exbB Fur consensus marked on Eick-Helmerich/Braun figure 1 a a t g a g a a c g a c t a t c a a t fur-11M9 17.5 bits a a t g a g a a c g a c t a t c a a t fur-24M9 19.1 bits * - 34 - * piece 14, exbD, exbD, config: linear, direction: +, begin: 1, end: 107 * *10 * *20 * *30 * 5' g c t a a a t c g c t g c c a c g a g g c c g a t t g c c g t t g c t a a c 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd56.exbD [------------------------------------------------------------------- ... exbD Natural sequence [-----------------------------------] exbD Fur consensus marked on Eick-Helmerich/Braun figure 1 [-t-a-----a---t-a---------t-a-a-t---c Published Fur consensus applied to exbD c a c g a g g c c g a t t g c c g t t fur-11M9 -5.0 bits *40 * *50 * *60 * *70 * 5' a g a g c t t c t g c g a c g c g a a g c g t c g c a g a a g c t c t g t t 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd56.exbD ... ------------------------] exbD Natural sequence [-----------] hairpin [------------------------------- ... exbD Natural sequence *80 * *90 * *100 * 5' a g c a a c g g c a a t c g g c c t c g t g g c a g c g a t t 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd56.exbD 74.5 bits [-----------------------------------] exbD Fur consensus marked on Eick-Helmerich/Braun figure 1 a a c g g c a a t c g g c c t c g t g fur-11M9 -5.0 bits ... ------------------------------------------------------------] exbD Natural sequence * - 35 - * piece 15, fhuF, fhuF, config: linear, direction: +, begin: 1, end: 109 * *10 * *20 * *30 * 5' g c t a c a a a t g a t a a a a a t t a t c a t a t g a t a t t g g t t a t 3' (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(- ... odd57.fhuF [------------------------------------------------------------------- ... fhuF Natural sequence g-a-t-------------t---t-c-----------] Fur consensus.1.2.3.10.12.13 [---------t-g-----------------t-a-t-c Fur consensus.6.7.16.17.18.19 [-------a-----a--------- ... Fur consensus.5.8 g c t a c a a a t g a t a a a a a t t fur-11M9 1.2 bits a t t g g t t a t ... fur-11M9 a a t g a t a a a a a t t a t c a t a fur-11M9 21.4 bits g a t a a a a a t t a t c a t a t g a fur-11M9 1.3 bits a a a a a t t a t c a t a t g a t a t fur-11M9 3.5 bits t a t g a t a t t g g t t a t ... fur-11M9 a a t g a t a a a a a t t a t c a t a fur-24M9 22.3 bits t a t g a t a t t g g t t a t ... fur-24M9 a t t g g t t a t ... fur-24M9 *40 * *50 * *60 * *70 * 5' c a t t a t c a a t g a a a c g c g a a g c g t t t c a t t g a t a a t g a 3' ... (-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(-(---|---)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)- ... odd57.fhuF ... --------------------------] fhuF Natural sequence [--------------- ... Fur consensus.10.12.15 [-----------] hairpin a t t g a t a a t g a ... fur-11M9 a a t g a ... fur-11M9 * - 36 - ... ------------] Fur consensus.5.8 a t t g a t a a t g a ... fur-24M9 ... c a t t a t c a a t fur-11M9 18.0 bits a a t g a ... fur-24M9 ... c a t t fur-11M9 19.8 bits ... c a t t fur-24M9 20.8 bits ... c a t t a t c a a t fur-24M9 16.1 bits *80 * *90 * *100 * 5' t a a c c a a t a t c a t a t g a t a a t t t t t a t c a t t t g 3' ... )-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-)-) odd57.fhuF 76.0 bits ... --t---t-----t-------] Fur consensus.10.12.15 ... t a a c c a a t fur-11M9 18.0 bits ... t a a c c a a t a t c a t a fur-11M9 19.8 bits ... t a a c c a a t fur-24M9 16.1 bits ... t a a c c a a t a t c a t a fur-24M9 20.8 bits a t a t c a t a t g a t a a t t t t t fur-11M9 3.5 bits * - 37 - t c a t a t g a t a a t t t t t a t c fur-11M9 1.3 bits t a t g a t a a t t t t t a t c a t t fur-11M9 21.4 bits t a t g a t a a t t t t t a t c a t t fur-24M9 22.3 bits