define "NC_000913.fimB" "-" "<]" "[>" 0 602 @ NC_000913 4538980 1 "NC_000913.fimB" "" define "NC_000913.fimE" "-" "<]" "[>" 0 596 @ NC_000913 4540060 1 "NC_000913.fimE" "" * orf 1.24 * 2007/12/07 19:07:50, 2007/12/06 18:15:19, small proteins E.coli-K12 NC_000913 fimB_fimE define "orf" "#" "<]" "[>" 0.0 2.0 * multiscan 3.94 define "ir" " w" " " " " -3.0 14.0 ribl "ir" * Ri 2.66 * * Ri(b,l) table is from: ** rseq 5.39 rsequence calculated from encoded sequences from: ** encode 1.40; encoding of sequences in ** * 2001/08/15 12:20:50, 1999/05/04 14:41:13, inst * * BOOK/INST sequences are from: * 2001/08/15 12:20:50, 1999/05/04 14:41:13, inst * title "inst"; * * PARAMETERS FOR Ri: * -3 14 from-to * 1 column of value file * -2147483647.000000 2147483647.000000 lowest to highest Ri selected * -2147483647.000000 2147483647.000000 lowest to highest Value selected * not printing sequences to sequ * printing sequences to rixyin * -: whole line printed when partial site * using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2 * * i alignmenttype first, book, instructions * Ri(a,l) Ri(c,l) Ri(g,l) Ri(t,l) l a c g t -3 14 frombase, tobase 0.763679 -0.567865 -0.078059 -0.559121 -3 1656 658 924 662 0.060296 0.121401 -0.896385 0.412266 -2 1017 1061 524 1298 0.115951 0.077219 -0.700990 0.315744 -1 1057 1029 600 1214 1.864201 -9.929808 -1.710640 -4.285952 0 3551 1 298 50 -9.930548 -9.930548 -9.930548 1.999450 1 0 0 0 3900 -9.930548 -9.930548 1.999450 -9.930548 2 0 0 3900 0 0.980085 -0.684256 -0.271597 -0.797951 3 1924 607 808 561 0.577986 0.185235 -0.610136 -0.486865 4 1456 1109 639 696 0.421131 -0.371388 -0.649038 0.320490 5 1306 754 622 1218 0.761063 -0.222449 -0.164937 -0.850324 6 1653 836 870 541 0.760190 -0.361852 -0.990229 0.033088 7 1652 759 491 998 0.327579 -0.404288 -0.227636 0.181327 8 1224 737 833 1106 0.511061 -0.074940 -0.356161 -0.246814 9 1390 926 762 822 0.320490 -0.232841 -1.013929 0.489098 10 1218 830 483 1369 0.361362 -0.236321 -0.539639 0.235099 11 1253 828 671 1148 0.516241 -0.161624 -0.127292 -0.398427 12 1395 872 893 740 0.262484 -0.145174 -1.056364 0.499598 13 1170 882 469 1379 0.129536 -0.173252 -0.456103 0.365961 14 1067 865 711 1257 * 6.721797 bits = mean (Rsequence of selected region) 2.259310 bits = standard deviation * 13.926145 bits = Ri of consensus sequence from -3 to 14 -40.078734 bits = Ri of anticonsensus sequence from -3 to 14 * -18.663794 bits = average Ri for random sequence from -3 to 14 * 3900 n, number of sequences used to create the matrix * asymmetric symmetry of the matrix * -5000.000000 Ri bound: lower bound on Ri 100.000000 Z bound: lower bound on Z 1.000000 P bound: upper probability * l extreme: char; h or l, the high or low extreme to be defined 0.0 wavelocation: real; the location in bases of the extreme 1.0 wavebit: real; the location in bits of the extreme 0.5 waveamplitude: real; the amplitude of the wave in bits 10.6 wavelength: real; the wave length of the wave in bases 0.4 0.4 0.0 dashon, dashoff, dashoffset (in bases) 0.0 thickness: real; the thickness of the cosine wave. <=0 means default . * multiscan 3.94 define "sd" " w" " " " " -12.0 4.0 ribl "sd" * Ri 2.66 * * Ri(b,l) table is from: ** rseq 5.39 rsequence calculated from encoded sequences from: ** encode 1.40; encoding of sequences in ** * 2001/08/15 12:19:55, 1999/05/04 14:41:13, inst * * BOOK/INST sequences are from: * 2001/08/15 12:19:55, 1999/05/04 14:41:13, inst * title "inst"; * * PARAMETERS FOR Ri: * -12 4 from-to * 1 column of value file * -2147483647.000000 2147483647.000000 lowest to highest Ri selected * -2147483647.000000 2147483647.000000 lowest to highest Value selected * not printing sequences to sequ * printing sequences to rixyin * -: whole line printed when partial site * using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2 * * i alignmenttype first, book, instructions * Ri(a,l) Ri(c,l) Ri(g,l) Ri(t,l) l a c g t -12 4 frombase, tobase 0.217397 -0.146810 -0.422014 0.246365 -12 1134 881 728 1157 0.214850 -0.225905 -0.493097 0.347479 -11 1132 834 693 1241 0.297808 -0.264472 -0.556943 0.329935 -10 1199 812 663 1226 0.335807 -0.201888 -0.667714 0.307402 -9 1231 848 614 1207 0.365961 -0.269813 -0.732592 0.354437 -8 1257 809 587 1247 0.390992 -0.260923 -0.644406 0.278426 -7 1279 814 624 1183 0.470004 -0.384844 -0.663022 0.282080 -6 1351 747 616 1186 0.534737 -0.443979 -0.628312 0.223744 -5 1413 717 631 1139 0.518308 -0.482725 -0.693794 0.301413 -4 1397 698 603 1202 0.728403 0.107739 0.058876 -2.168257 -3 1616 1051 1016 217 1.215487 -1.382914 -0.412139 -0.885414 -2 2265 374 733 528 -1.993170 -4.122453 1.824244 -2.749899 -1 245 56 3454 145 -9.930548 -9.930548 1.999450 -9.930548 0 0 0 3900 0 1.567045 -1.677143 -9.930548 -0.468329 1 2890 305 0 705 0.187835 -1.739984 0.884774 -0.486865 2 1111 292 1801 696 0.657969 -0.888149 -0.404288 0.169539 3 1539 527 737 1097 0.550982 -0.390650 -0.468329 0.067371 4 1429 744 705 1022 * 5.801573 bits = mean (Rsequence of selected region) 2.550546 bits = standard deviation * 12.967941 bits = Ri of consensus sequence from -12 to 4 -36.133077 bits = Ri of anticonsensus sequence from -12 to 4 * -13.026643 bits = average Ri for random sequence from -12 to 4 * 3900 n, number of sequences used to create the matrix * asymmetric symmetry of the matrix * -5000.000000 Ri bound: lower bound on Ri 100.000000 Z bound: lower bound on Z 1.000000 P bound: upper probability * l extreme: char; h or l, the high or low extreme to be defined 0.0 wavelocation: real; the location in bases of the extreme 1.0 wavebit: real; the location in bits of the extreme 0.5 waveamplitude: real; the amplitude of the wave in bits 10.6 wavelength: real; the wave length of the wave in bases 0.4 0.4 0.0 dashon, dashoff, dashoffset (in bases) 0.0 thickness: real; the thickness of the cosine wave. <=0 means default . @ NC_000913 4539953.0 -1 "ir" "fimB_fimE-" 3.172859 -1.570806 0.058114 @ NC_000913 4539932.0 -1 "orf" "8 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539960.0 -1 "sd" "" 5.667694 -0.052490 0.479069 define "sd-(7)-ir 4539953 Gap" "-" "}{" "}{" 0.0 -7.0 @ NC_000913 4539953.0 -1 "sd-(7)-ir 4539953 Gap" "3.7 bits" 3.703029 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539953 fimB_fimE- total 5.1" "-" "||" "||" 0.0 7.0 @ NC_000913 4539960.0 -1 "sd-ir 4539953 fimB_fimE- total 5.1" "bits" 5.137524 8.000000 4539932.000000 0.000000 -> [ir], [sd] @ NC_000913 4539811.0 -1 "ir" "fimB_fimE-" 2.518588 -1.860395 0.031415 @ NC_000913 4539781.0 -1 "orf" "11 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539818.0 -1 "sd" "" 8.204567 0.942149 0.173058 define "sd-(7)-ir 4539811 Gap" "-" "}{" "}{" 0.0 -7.0 @ NC_000913 4539811.0 -1 "sd-(7)-ir 4539811 Gap" "3.7 bits" 3.703029 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539811 fimB_fimE- total 7.0" "-" "||" "||" 0.0 7.0 @ NC_000913 4539818.0 -1 "sd-ir 4539811 fimB_fimE- total 7.0" "bits" 7.020126 11.000000 4539781.000000 1.000000 -> [ir], [sd] @ NC_000913 4539789.0 -1 "ir" "fimB_fimE-" 1.750387 -2.200411 0.013889 @ NC_000913 4539750.0 -1 "orf" "14 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539799.0 -1 "sd" "" 7.636764 0.719529 0.235908 define "sd-(10)-ir 4539789 Gap" "-" "}{" "}{" 0.0 -10.0 @ NC_000913 4539789.0 -1 "sd-(10)-ir 4539789 Gap" "2.7 bits" 2.719960 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539789 fimB_fimE- total 6.7" "-" "||" "||" 0.0 10.0 @ NC_000913 4539799.0 -1 "sd-ir 4539789 fimB_fimE- total 6.7" "bits" 6.667191 14.000000 4539750.000000 1.000000 -> [ir], [sd] @ NC_000913 4539786.0 -1 "ir" "fimB_fimE-" 7.294672 0.253562 0.399917 @ NC_000913 4539750.0 -1 "orf" "13 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539799.0 -1 "sd" "" 7.636764 0.719529 0.235908 define "sd-(13)-ir 4539786 Gap" "-" "}{" "}{" 0.0 -13.0 @ NC_000913 4539786.0 -1 "sd-(13)-ir 4539786 Gap" "4.6 bits" 4.637227 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539786 fimB_fimE- total 10.3" "-" "||" "||" 0.0 13.0 @ NC_000913 4539799.0 -1 "sd-ir 4539786 fimB_fimE- total 10.3" "bits" 10.294209 13.000000 4539750.000000 1.000000 -> [ir], [sd] @ NC_000913 4539784.0 -1 "ir" "fimB_fimE-" 4.336388 -1.055813 0.145527 @ NC_000913 4539781.0 -1 "orf" "2 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539799.0 -1 "sd" "" 7.636764 0.719529 0.235908 define "sd-(15)-ir 4539784 Gap" "-" "}{" "}{" 0.0 -15.0 @ NC_000913 4539784.0 -1 "sd-(15)-ir 4539784 Gap" "6.0 bits" 6.001111 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539784 fimB_fimE- total 6.0" "-" "||" "||" 0.0 15.0 @ NC_000913 4539799.0 -1 "sd-ir 4539784 fimB_fimE- total 6.0" "bits" 5.972041 2.000000 4539781.000000 0.000000 -> [ir], [sd] @ NC_000913 4539774.0 -1 "ir" "fimB_fimE-" 9.902781 1.407945 0.079574 @ NC_000913 4539750.0 -1 "orf" "9 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539784.0 -1 "sd" "" 3.751627 -0.803728 0.210777 define "sd-(10)-ir 4539774 Gap" "-" "}{" "}{" 0.0 -10.0 @ NC_000913 4539774.0 -1 "sd-(10)-ir 4539774 Gap" "2.7 bits" 2.719960 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539774 fimB_fimE- total 10.9" "-" "||" "||" 0.0 10.0 @ NC_000913 4539784.0 -1 "sd-ir 4539774 fimB_fimE- total 10.9" "bits" 10.934448 9.000000 4539750.000000 0.000000 -> [ir], [sd] @ NC_000913 4539770.0 -1 "ir" "fimB_fimE-" 6.151567 -0.252391 0.400369 @ NC_000913 4539707.0 -1 "orf" "22 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539784.0 -1 "sd" "" 3.751627 -0.803728 0.210777 define "sd-(14)-ir 4539770 Gap" "-" "}{" "}{" 0.0 -14.0 @ NC_000913 4539770.0 -1 "sd-(14)-ir 4539770 Gap" "4.9 bits" 4.898425 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539770 fimB_fimE- total 5.0" "-" "||" "||" 0.0 14.0 @ NC_000913 4539784.0 -1 "sd-ir 4539770 fimB_fimE- total 5.0" "bits" 5.004769 22.000000 4539707.000000 1.000000 -> [ir], [sd] @ NC_000913 4539705.0 -1 "ir" "fimB_fimE-" 7.449244 0.321978 0.373735 @ NC_000913 4539660.0 -1 "orf" "16 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539714.0 -1 "sd" "" 4.222609 -0.619069 0.267935 define "sd-(9)-ir 4539705 Gap" "-" "}{" "}{" 0.0 -9.0 @ NC_000913 4539705.0 -1 "sd-(9)-ir 4539705 Gap" "2.3 bits" 2.279003 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539705 fimB_fimE- total 9.4" "-" "||" "||" 0.0 9.0 @ NC_000913 4539714.0 -1 "sd-ir 4539705 fimB_fimE- total 9.4" "bits" 9.392850 16.000000 4539660.000000 1.000000 -> [ir], [sd] @ NC_000913 4539696.0 -1 "ir" "fimB_fimE-" 10.681217 1.752491 0.039845 @ NC_000913 4539660.0 -1 "orf" "13 codons" R 1.000000 0.000000 0.000000 1.000000 @ NC_000913 4539703.0 -1 "sd" "" 1.578260 -1.655847 0.048876 define "sd-(7)-ir 4539696 Gap" "-" "}{" "}{" 0.0 -7.0 @ NC_000913 4539696.0 -1 "sd-(7)-ir 4539696 Gap" "3.7 bits" 3.703029 2.276413 9.344296 0.000000 -> [ir], [sd] define "sd-ir 4539696 fimB_fimE- total 8.6" "-" "||" "||" 0.0 7.0 @ NC_000913 4539703.0 -1 "sd-ir 4539696 fimB_fimE- total 8.6" "bits" 8.556448 13.000000 4539660.000000 1.000000 -> [ir], [sd] * * 1 sequences are in the genomebook * 9 ORFs are in the genomebook * multiscan 3.94 * 2007/12/07 19:07:50, 2007/12/06 18:15:19, small proteins E.coli-K12 NC_000913 fimB_fimE define "p10" " w" " " " " -1.0 4.0 ribl "p10" * Ri 2.69 * * Ri(b,l) table is from: ** rseq 5.39 rsequence calculated from encoded sequences from: ** encode 1.41; encoding of sequences in ** * 2003/04/23 22:04:54, 1999/05/04 14:41:13, inst * * BOOK/INST sequences are from: * 2003/04/23 22:04:54, 1999/05/04 14:41:13, inst * title "inst"; * * PARAMETERS FOR Ri: * -1 4 from-to * 1 column of value file * -2147483647.000000 2147483647.000000 lowest to highest Ri selected * -2147483647.000000 2147483647.000000 lowest to highest Value selected * not printing sequences to sequ * printing sequences to rixyin * -: whole line printed when partial site * using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2 * * i alignmenttype first, book, instructions * Ri(a,l) Ri(c,l) Ri(g,l) Ri(t,l) l a c g t -1 4 frombase, tobase -2.129296 -1.226594 -2.404931 1.650922 -1 23 43 19 316 1.890173 -6.660036 -5.067896 -2.009002 0 373 0 3 25 0.061387 -0.608464 -0.980433 0.830957 1 105 66 51 179 1.061387 -0.980433 -0.871499 -0.243467 2 210 51 55 85 1.061387 -0.052946 -1.443405 -0.819968 3 210 97 37 57 -6.660036 -2.404931 -3.193427 1.882417 4 0 19 11 371 * 4.783894 bits = mean (Rsequence of selected region) 2.128061 bits = standard deviation * 8.377244 bits = Ri of consensus sequence from -1 to 4 -19.129274 bits = Ri of anticonsensus sequence from -1 to 4 * -7.329533 bits = average Ri for random sequence from -1 to 4 * 401 n, number of sequences used to create the matrix * asymmetric symmetry of the matrix * -5000.000000 Ri bound: lower bound on Ri 100.000000 Z bound: lower bound on Z 1.000000 P bound: upper probability * l extreme: char; h or l, the high or low extreme to be defined 4.0 wavelocation: real; the location in bases of the extreme 1.0 wavebit: real; the location in bits of the extreme 0.5 waveamplitude: real; the amplitude of the wave in bits 10.6 wavelength: real; the wave length of the wave in bases 0.4 0.4 0.0 dashon, dashoff, dashoffset (in bases) 0.0 thickness: real; the thickness of the cosine wave. <=0 means default . * multiscan 3.94 * 2007/12/07 19:07:50, 2007/12/06 18:15:19, small proteins E.coli-K12 NC_000913 fimB_fimE define "p35" " w" " " " " -1.0 4.0 ribl "p35" * Ri 2.69 * * Ri(b,l) table is from: ** rseq 5.39 rsequence calculated from encoded sequences from: ** encode 1.41; encoding of sequences in ** * 2003/04/23 22:05:06, 1999/05/04 14:41:13, inst * * BOOK/INST sequences are from: * 2003/04/23 22:05:06, 1999/05/04 14:41:13, inst * title "inst"; * * PARAMETERS FOR Ri: * -1 4 from-to * 1 column of value file * -2147483647.000000 2147483647.000000 lowest to highest Ri selected * -2147483647.000000 2147483647.000000 lowest to highest Value selected * not printing sequences to sequ * printing sequences to rixyin * -: whole line printed when partial site * using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2 * * i alignmenttype first, book, instructions * Ri(a,l) Ri(c,l) Ri(g,l) Ri(t,l) l a c g t -1 4 frombase, tobase -1.260541 -6.660036 -6.660036 1.834982 -1 42 0 0 359 -2.482933 -6.660036 -0.482933 1.627912 0 18 0 72 311 -2.482933 -4.067896 1.277879 0.402424 1 18 6 244 133 0.781770 0.423957 -6.660036 -0.113700 2 173 135 0 93 0.496889 0.476425 -1.330930 -0.349078 3 142 140 40 79 0.413231 -1.009002 -0.482933 0.527051 4 134 50 72 145 * 4.024391 bits = mean (Rsequence of selected region) 1.878152 bits = standard deviation * 6.546482 bits = Ri of consensus sequence from -1 to 4 -26.387937 bits = Ri of anticonsensus sequence from -1 to 4 * -8.110127 bits = average Ri for random sequence from -1 to 4 * 401 n, number of sequences used to create the matrix * asymmetric symmetry of the matrix * -5000.000000 Ri bound: lower bound on Ri 100.000000 Z bound: lower bound on Z 1.000000 P bound: upper probability * h extreme: char; h or l, the high or low extreme to be defined -1.0 wavelocation: real; the location in bases of the extreme 2.0 wavebit: real; the location in bits of the extreme 0.5 waveamplitude: real; the amplitude of the wave in bits 10.6 wavelength: real; the wave length of the wave in bases 0.4 0.4 0.0 dashon, dashoff, dashoffset (in bases) 0.0 thickness: real; the thickness of the cosine wave. <=0 means default . @ NC_000913 4540067.0 -1 "p10" " 3.4 bits" 3.363735 -0.667349 0.252275 @ NC_000913 4540088.0 -1 "p35" " 4.1 bits" 4.114511 0.047983 0.480865 define "p35-(21)-p10 4540067 Gap" "-" "}{" "}{" 0.0 -21 @ NC_000913 4540067.0 -1 "p35-(21)-p10 4540067 Gap" "3.3 bits" 3.298901 1.428290 4.003602 define "p35-p10 4540067 total 4.2" "-" "||" "||" 0 21 @ NC_000913 4540088 -1 "p35-p10 4540067 total 4.2" "bits" 4.179345 0.000000 0.000000 @ NC_000913 4540007.0 -1 "p10" " 0.2 bits" 0.161131 -2.172289 0.014917 @ NC_000913 4540030.0 -1 "p35" " 6.5 bits" 6.546483 1.342858 0.089659 define "p35-(23)-p10 4540007 Gap" "-" "}{" "}{" 0.0 -23 @ NC_000913 4540007.0 -1 "p35-(23)-p10 4540007 Gap" "1.4 bits" 1.437284 1.428290 4.003602 define "p35-p10 4540007 total 5.3" "-" "||" "||" 0 23 @ NC_000913 4540030 -1 "p35-p10 4540007 total 5.3" "bits" 5.270330 0.000000 0.000000 @ NC_000913 4539927.0 -1 "p10" " 6.3 bits" 6.335423 0.729081 0.232976 @ NC_000913 4539951.0 -1 "p35" " 3.1 bits" 3.118038 -0.482577 0.314698 define "p35-(24)-p10 4539927 Gap" "-" "}{" "}{" 0.0 -24 @ NC_000913 4539927.0 -1 "p35-(24)-p10 4539927 Gap" "2.4 bits" 2.427634 1.428290 4.003602 define "p35-p10 4539927 total 7.0" "-" "||" "||" 0 24 @ NC_000913 4539951 -1 "p35-p10 4539927 total 7.0" "bits" 7.025827 0.000000 0.000000 @ NC_000913 4539914.0 -1 "p10" " 7.6 bits" 7.607673 1.326926 0.092267 @ NC_000913 4539937.0 -1 "p35" " 2.4 bits" 2.427858 -0.850055 0.197647 define "p35-(23)-p10 4539914 Gap" "-" "}{" "}{" 0.0 -23 @ NC_000913 4539914.0 -1 "p35-(23)-p10 4539914 Gap" "1.4 bits" 1.437284 1.428290 4.003602 define "p35-p10 4539914 total 8.6" "-" "||" "||" 0 23 @ NC_000913 4539937 -1 "p35-p10 4539914 total 8.6" "bits" 8.598247 0.000000 0.000000 @ NC_000913 4539863.0 -1 "p10" " 3.2 bits" 3.157604 -0.764212 0.222370 @ NC_000913 4539886.0 -1 "p35" " 4.6 bits" 4.641274 0.328452 0.371285 define "p35-(23)-p10 4539863 Gap" "-" "}{" "}{" 0.0 -23 @ NC_000913 4539863.0 -1 "p35-(23)-p10 4539863 Gap" "1.4 bits" 1.437284 1.428290 4.003602 define "p35-p10 4539863 total 6.4" "-" "||" "||" 0 23 @ NC_000913 4539886 -1 "p35-p10 4539863 total 6.4" "bits" 6.361594 0.000000 0.000000 @ NC_000913 4539858.0 -1 "p10" " 4.7 bits" 4.684498 -0.046707 0.481373 @ NC_000913 4539880.0 -1 "p35" " 5.7 bits" 5.700516 0.892433 0.186080 define "p35-(22)-p10 4539858 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539858.0 -1 "p35-(22)-p10 4539858 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539858 total 8.1" "-" "||" "||" 0 22 @ NC_000913 4539880 -1 "p35-p10 4539858 total 8.1" "bits" 8.050489 0.000000 0.000000 @ NC_000913 4539826.0 -1 "p10" " 3.8 bits" 3.827455 -0.449442 0.326557 @ NC_000913 4539848.0 -1 "p35" " 3.6 bits" 3.589671 -0.231462 0.408478 define "p35-(22)-p10 4539826 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539826.0 -1 "p35-(22)-p10 4539826 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539826 total 5.1" "-" "||" "||" 0 22 @ NC_000913 4539848 -1 "p35-p10 4539826 total 5.1" "bits" 5.082601 0.000000 0.000000 @ NC_000913 4539770.0 -1 "p10" " 2.7 bits" 2.664139 -0.996097 0.159602 @ NC_000913 4539793.0 -1 "p35" " 4.7 bits" 4.661044 0.338978 0.367313 define "p35-(23)-p10 4539770 Gap" "-" "}{" "}{" 0.0 -23 @ NC_000913 4539770.0 -1 "p35-(23)-p10 4539770 Gap" "1.4 bits" 1.437284 1.428290 4.003602 define "p35-p10 4539770 total 5.9" "-" "||" "||" 0 23 @ NC_000913 4539793 -1 "p35-p10 4539770 total 5.9" "bits" 5.887899 0.000000 0.000000 @ NC_000913 4539754.0 -1 "p10" " 5.2 bits" 5.191034 0.191320 0.424138 @ NC_000913 4539776.0 -1 "p35" " 3.8 bits" 3.815077 -0.111447 0.455631 define "p35-(22)-p10 4539754 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539754.0 -1 "p35-(22)-p10 4539754 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539754 total 6.7" "-" "||" "||" 0 22 @ NC_000913 4539776 -1 "p35-p10 4539754 total 6.7" "bits" 6.671586 0.000000 0.000000 @ NC_000913 4539740.0 -1 "p10" " 2.2 bits" 2.205992 -1.211385 0.112874 @ NC_000913 4539763.0 -1 "p35" " 4.8 bits" 4.805046 0.415651 0.338833 define "p35-(23)-p10 4539740 Gap" "-" "}{" "}{" 0.0 -23 @ NC_000913 4539740.0 -1 "p35-(23)-p10 4539740 Gap" "1.4 bits" 1.437284 1.428290 4.003602 define "p35-p10 4539740 total 5.6" "-" "||" "||" 0 23 @ NC_000913 4539763 -1 "p35-p10 4539740 total 5.6" "bits" 5.573754 0.000000 0.000000 @ NC_000913 4539733.0 -1 "p10" " 1.4 bits" 1.361824 -1.608070 0.053910 @ NC_000913 4539756.0 -1 "p35" " 4.8 bits" 4.825061 0.426307 0.334942 define "p35-(23)-p10 4539733 Gap" "-" "}{" "}{" 0.0 -23 @ NC_000913 4539733.0 -1 "p35-(23)-p10 4539733 Gap" "1.4 bits" 1.437284 1.428290 4.003602 define "p35-p10 4539733 total 4.7" "-" "||" "||" 0 23 @ NC_000913 4539756 -1 "p35-p10 4539733 total 4.7" "bits" 4.749601 0.000000 0.000000 @ NC_000913 4539730.0 -1 "p10" " 5.2 bits" 5.191034 0.191320 0.424138 @ NC_000913 4539756.0 -1 "p35" " 4.8 bits" 4.825061 0.426307 0.334942 define "p35-(26)-p10 4539730 Gap" "-" "}{" "}{" 0.0 -26 @ NC_000913 4539730.0 -1 "p35-(26)-p10 4539730 Gap" "3.7 bits" 3.702256 1.428290 4.003602 define "p35-p10 4539730 total 6.3" "-" "||" "||" 0 26 @ NC_000913 4539756 -1 "p35-p10 4539730 total 6.3" "bits" 6.313839 0.000000 0.000000 @ NC_000913 4539726.0 -1 "p10" " 1.4 bits" 1.361824 -1.608070 0.053910 @ NC_000913 4539750.0 -1 "p35" " 5.5 bits" 5.536499 0.805104 0.210380 define "p35-(24)-p10 4539726 Gap" "-" "}{" "}{" 0.0 -24 @ NC_000913 4539726.0 -1 "p35-(24)-p10 4539726 Gap" "2.4 bits" 2.427634 1.428290 4.003602 define "p35-p10 4539726 total 4.5" "-" "||" "||" 0 24 @ NC_000913 4539750 -1 "p35-p10 4539726 total 4.5" "bits" 4.470689 0.000000 0.000000 @ NC_000913 4539712.0 -1 "p10" " 2.6 bits" 2.594165 -1.028978 0.151745 @ NC_000913 4539733.0 -1 "p35" " 5.7 bits" 5.651013 0.866076 0.193224 define "p35-(21)-p10 4539712 Gap" "-" "}{" "}{" 0.0 -21 @ NC_000913 4539712.0 -1 "p35-(21)-p10 4539712 Gap" "3.3 bits" 3.298901 1.428290 4.003602 define "p35-p10 4539712 total 4.9" "-" "||" "||" 0 21 @ NC_000913 4539733 -1 "p35-p10 4539712 total 4.9" "bits" 4.946277 0.000000 0.000000 @ NC_000913 4539711.0 -1 "p10" " 3.7 bits" 3.684498 -0.516619 0.302711 @ NC_000913 4539733.0 -1 "p35" " 5.7 bits" 5.651013 0.866076 0.193224 define "p35-(22)-p10 4539711 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539711.0 -1 "p35-(22)-p10 4539711 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539711 total 7.0" "-" "||" "||" 0 22 @ NC_000913 4539733 -1 "p35-p10 4539711 total 7.0" "bits" 7.000986 0.000000 0.000000 @ NC_000913 4539706.0 -1 "p10" " 3.8 bits" 3.798027 -0.463270 0.321585 @ NC_000913 4539728.0 -1 "p35" " 2.9 bits" 2.947739 -0.573251 0.283237 define "p35-(22)-p10 4539706 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539706.0 -1 "p35-(22)-p10 4539706 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539706 total 4.4" "-" "||" "||" 0 22 @ NC_000913 4539728 -1 "p35-p10 4539706 total 4.4" "bits" 4.411241 0.000000 0.000000 @ NC_000913 4539701.0 -1 "p10" " 2.6 bits" 2.596713 -1.027781 0.152026 @ NC_000913 4539726.0 -1 "p35" " 5.7 bits" 5.651013 0.866076 0.193224 define "p35-(25)-p10 4539701 Gap" "-" "}{" "}{" 0.0 -25 @ NC_000913 4539701.0 -1 "p35-(25)-p10 4539701 Gap" "4.0 bits" 4.012597 1.428290 4.003602 define "p35-p10 4539701 total 4.2" "-" "||" "||" 0 25 @ NC_000913 4539726 -1 "p35-p10 4539701 total 4.2" "bits" 4.235129 0.000000 0.000000 @ NC_000913 4539699.0 -1 "p10" " 7.1 bits" 7.072389 1.075390 0.141100 @ NC_000913 4539721.0 -1 "p35" " 3.5 bits" 3.475851 -0.292064 0.385119 define "p35-(22)-p10 4539699 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539699.0 -1 "p35-(22)-p10 4539699 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539699 total 8.2" "-" "||" "||" 0 22 @ NC_000913 4539721 -1 "p35-p10 4539699 total 8.2" "bits" 8.213715 0.000000 0.000000 @ NC_000913 4539696.0 -1 "p10" " 6.4 bits" 6.444357 0.780270 0.217616 @ NC_000913 4539721.0 -1 "p35" " 3.5 bits" 3.475851 -0.292064 0.385119 define "p35-(25)-p10 4539696 Gap" "-" "}{" "}{" 0.0 -25 @ NC_000913 4539696.0 -1 "p35-(25)-p10 4539696 Gap" "4.0 bits" 4.012597 1.428290 4.003602 define "p35-p10 4539696 total 5.9" "-" "||" "||" 0 25 @ NC_000913 4539721 -1 "p35-p10 4539696 total 5.9" "bits" 5.907611 0.000000 0.000000 @ NC_000913 4539693.0 -1 "p10" " 4.3 bits" 4.321390 -0.217336 0.413973 @ NC_000913 4539715.0 -1 "p35" " 2.6 bits" 2.580381 -0.768846 0.220992 define "p35-(22)-p10 4539693 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539693.0 -1 "p35-(22)-p10 4539693 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539693 total 4.6" "-" "||" "||" 0 22 @ NC_000913 4539715 -1 "p35-p10 4539693 total 4.6" "bits" 4.567246 0.000000 0.000000 @ NC_000913 4539680.0 -1 "p10" " 2.9 bits" 2.945973 -0.863660 0.193887 @ NC_000913 4539701.0 -1 "p35" " 4.8 bits" 4.825061 0.426307 0.334942 define "p35-(21)-p10 4539680 Gap" "-" "}{" "}{" 0.0 -21 @ NC_000913 4539680.0 -1 "p35-(21)-p10 4539680 Gap" "3.3 bits" 3.298901 1.428290 4.003602 define "p35-p10 4539680 total 4.5" "-" "||" "||" 0 21 @ NC_000913 4539701 -1 "p35-p10 4539680 total 4.5" "bits" 4.472133 0.000000 0.000000 @ NC_000913 4539674.0 -1 "p10" " 6.9 bits" 6.937822 1.012155 0.155732 @ NC_000913 4539695.0 -1 "p35" " 2.5 bits" 2.491173 -0.816344 0.207152 define "p35-(21)-p10 4539674 Gap" "-" "}{" "}{" 0.0 -21 @ NC_000913 4539674.0 -1 "p35-(21)-p10 4539674 Gap" "3.3 bits" 3.298901 1.428290 4.003602 define "p35-p10 4539674 total 6.1" "-" "||" "||" 0 21 @ NC_000913 4539695 -1 "p35-p10 4539674 total 6.1" "bits" 6.130094 0.000000 0.000000 @ NC_000913 4539669.0 -1 "p10" " 5.6 bits" 5.565853 0.367451 0.356641 @ NC_000913 4539695.0 -1 "p35" " 2.5 bits" 2.491173 -0.816344 0.207152 define "p35-(26)-p10 4539669 Gap" "-" "}{" "}{" 0.0 -26 @ NC_000913 4539669.0 -1 "p35-(26)-p10 4539669 Gap" "3.7 bits" 3.702256 1.428290 4.003602 define "p35-p10 4539669 total 4.4" "-" "||" "||" 0 26 @ NC_000913 4539695 -1 "p35-p10 4539669 total 4.4" "bits" 4.354770 0.000000 0.000000 @ NC_000913 4539617.0 -1 "p10" " 3.4 bits" 3.379644 -0.659873 0.254668 @ NC_000913 4539639.0 -1 "p35" " 5.6 bits" 5.586696 0.831831 0.202752 define "p35-(22)-p10 4539617 Gap" "-" "}{" "}{" 0.0 -22 @ NC_000913 4539617.0 -1 "p35-(22)-p10 4539617 Gap" "2.3 bits" 2.334525 1.428290 4.003602 define "p35-p10 4539617 total 6.6" "-" "||" "||" 0 22 @ NC_000913 4539639 -1 "p35-p10 4539617 total 6.6" "bits" 6.631815 0.000000 0.000000 @ NC_000913 4539589.0 -1 "p10" " 1.9 bits" 1.852750 -1.377378 0.084198 @ NC_000913 4539612.0 -1 "p35" " 4.1 bits" 4.134975 0.058879 0.476524 define "p35-(23)-p10 4539589 Gap" "-" "}{" "}{" 0.0 -23 @ NC_000913 4539589.0 -1 "p35-(23)-p10 4539589 Gap" "1.4 bits" 1.437284 1.428290 4.003602 define "p35-p10 4539589 total 4.6" "-" "||" "||" 0 23 @ NC_000913 4539612 -1 "p35-p10 4539589 total 4.6" "bits" 4.550441 0.000000 0.000000 * petalfeatures: color rectangle features for the lister program * version = 2.16 of mkpetals 2007 Dec 07 * format: * el: integer; (* edgelinewidth: edge linewidth (integer) *) * c : char; (* color kind: how color is defined: r for RGB, h for HSB *) * (* ---------------------------------------------- *) * eh: real; (* edgeh: edge hue OR red *) * es: real; (* edges: edge saturation OR blue *) * eb: real; (* edgeb: edge brightness OR green *) * (* ---------------------------------------------- *) * fh: real; (* fillh: fill hue OR red *) * fs: real; (* fills: fill saturation OR blue *) * fb: real; (* fillb: fill brightness OR green *) * (* ---------------------------------------------- *) * spare: real; (* spare *) * "name" el c eh es eb fh fs fb spare * * Determine rgb for full saturation: * hsb is 0.000 1 1.0 * rgb is 1 0 0 petal "ir" -1 h 1.0 0.0 1.0 0.000 -1 1.0 0.0 * * Determine rgb for full saturation: * hsb is 0.250 1 1.0 * rgb is 0.499997914 1 0 petal "sd" -1 h 1.0 0.0 1.0 0.250 -1 1.0 0.0 * * Determine rgb for full saturation: * hsb is 0.500 1 1.0 * rgb is 0 1 1 petal "p10" -1 h 1.0 0.0 1.0 0.500 -1 1.0 0.0 * * Determine rgb for full saturation: * hsb is 0.750 1 1.0 * rgb is 0.499998093 0 1 petal "p35" -1 h 1.0 0.0 1.0 0.750 -1 1.0 0.0