Hyperdensity of promoter-like sites at the intergenic regions of 'Shock All' genes.

osmotic: Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli
  Zhe Sun, Cedric Cagliero, Jerome Izard, Yixiong Chen, Yan Ning Zhou, William F Heinz, Thomas D Schneider and Ding Jun Jin

• https://doi.org/10.1093/nar/gkz159
• PubMed 30843055
• BiBTeX reference:

  @article{Sun.Jin2019,
  author = "Z. Sun
   and C. Cagliero
   and J. Izard
   and Y. Chen
   and Y. N. Zhou
   and W. F. Heinz
   and T. D. Schneider
   and D. J. Jin",
  title = "{Density of $\sigma{70}$ promoter-like sites
  in the intergenic regions dictates the redistribution
  of RNA polymerase during osmotic stress in
  \emph{Escherichia coli}}",
  journal = "Nucleic Acids Res.",
  volume = "47",
  pages = "3970--3985",
  pmid = "30843055",
  pmcid = "PMC6486629",
  note = "\url {https://doi.org/10.1093/nar/gkz159}",
  year = "2019"}
  

Background Papers

• Sequence Logos
  • schneider1986: Information Content of Binding Sites
  • logopaper: Sequence Logos: A New Way to Display Consensus Sequences
• Sequence Walkers
  • flexrbs: Anatomy of Escherichia coli Ribosome Binding Sites
  • flexprom: Anatomy of Escherichia coli sigma⁷⁰ promoters

Permanent link https://alum.mit.edu/www/toms/papers/osmotic/ points to the current web location.

Schneider Lab
origin: 2019 Mar 12
updated: version = 1.01 of osmotic.html 2022 Dec 14